Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : DLL

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 52


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O O O N N N 0 -5.051 -0.147 0.672
2 CB C CB N N N 0 -5.474 0.963 -1.363
3 CG C CG N Y N 0 -6.862 1.096 -0.793
4 CD2 C CD2 N Y N 0 -7.193 2.198 -0.027
5 CD1 C CD1 N Y N 0 -7.807 0.118 -1.041
6 CE2 C CE2 N Y N 0 -8.467 2.319 0.496
7 CE1 C CE1 N Y N 0 -9.081 0.239 -0.518
8 CZ C CZ N Y N 0 -9.41 1.339 0.252
9 P P P N N N 0 -2.437 -0.795 0.42
10 O2P O O2P N N N 0 -3.103 -2.074 0.753
11 O3P O O3P N N N 0 -2.308 0.104 1.75
12 O1P O O1P N N N 0 -3.308 -0.005 -0.679
13 O5' O O5' N N N 0 -0.969 -1.092 -0.171
14 C5' C C5' N N N 0 0.007 -1.87 0.525
15 O4' O O4' N N N 0 1.888 -0.656 -0.419
16 O3' O O3' N N N 0 2.63 -3.986 -0.467
17 C2' C C2' R N N 0 3.545 -1.981 0.595
18 O2' O O2' N N N 0 4.75 -2.697 0.317
19 C1' C C1' R N N 0 3.317 -0.856 -0.447
20 N9 N N9 N Y N 0 4.017 0.367 -0.047
21 C8 C C8 N Y N 0 3.508 1.375 0.717
22 N7 N N7 N Y N 0 4.403 2.306 0.878
23 C5 C C5 N Y N 0 5.54 1.956 0.229
24 C6 C C6 N Y N 0 6.802 2.55 0.057
25 CAZ C CAZ N N N 0 -4.596 0.229 -0.382
26 N6 N N6 N N N 0 7.09 3.778 0.625
27 C4' C C4' R N N 0 1.284 -1.956 -0.314
28 N1 N N1 N Y N 0 7.712 1.904 -0.665
29 C3' C C3' S N N 0 2.304 -2.881 0.377
30 C2 C C2 N Y N 0 7.446 0.732 -1.211
31 C4 C C4 N Y N 0 5.308 0.706 -0.367
32 N3 N N3 N Y N 0 6.278 0.138 -1.076
33 HB1C H HB1C N N N 0 -5.517 0.407 -2.299
34 HB2C H HB2C N N N 0 -5.061 1.955 -1.549
35 HD2 H HD2 N N N 0 -6.456 2.964 0.163
36 HD1 H HD1 N N N 0 -7.551 -0.741 -1.644
37 HE2 H HE2 N N N 0 -8.725 3.18 1.095
38 HE1 H HE1 N N N 0 -9.82 -0.525 -0.713
39 H3P H H3P N N N 0 -1.879 0.959 1.606
40 HZ H HZ N N N 0 -10.405 1.434 0.661
41 H5'1 H H5'1 N N N 0 0.232 -1.399 1.482
42 H5'2 H H5'2 N N N 0 -0.383 -2.874 0.697
43 H4' H H4' N N N 0 1.049 -2.337 -1.308
44 H1' H H1' N N N 0 3.641 -1.178 -1.437
45 H3' H H3' N N N 0 3.312 -4.57 -0.106
46 HA H HA N N N 0 1.916 -3.233 1.333
47 H2' H H2' N N N 0 3.56 -1.576 1.607
48 HB H HB N N N 0 4.936 -3.411 0.941
49 H8 H H8 N N N 0 2.51 1.398 1.127
50 H61N H H61N N N N 0 6.417 4.24 1.15
51 H62N H H62N N N N 0 7.965 4.178 0.499
52 H2 H H2 N N N 0 8.215 0.241 -1.789