data_DLL
#
_chem_comp.id DLL
_chem_comp.name "5'-O-[HYDROXY(PHENYLACETYL)PHOSPHORYL]ADENOSINE"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C18 H20 N5 O8 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2010-12-15
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 465.354
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DLL
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2Y4N
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DLL O O O 0 1 N N N N N N 3.260 -7.933 -12.961 -5.051 -0.147 0.672 O DLL 1
DLL CB CB C 0 1 N N N N N N 5.175 -7.434 -11.563 -5.474 0.963 -1.363 CB DLL 2
DLL CG CG C 0 1 Y N N N N N 5.134 -6.040 -12.194 -6.862 1.096 -0.793 CG DLL 3
DLL CD2 CD2 C 0 1 Y N N N N N 4.403 -5.029 -11.573 -7.193 2.198 -0.027 CD2 DLL 4
DLL CD1 CD1 C 0 1 Y N N N N N 5.959 -5.736 -13.276 -7.807 0.118 -1.041 CD1 DLL 5
DLL CE2 CE2 C 0 1 Y N N N N N 4.413 -3.736 -12.091 -8.467 2.319 0.496 CE2 DLL 6
DLL CE1 CE1 C 0 1 Y N N N N N 5.982 -4.438 -13.784 -9.081 0.239 -0.518 CE1 DLL 7
DLL CZ CZ C 0 1 Y N N N N N 5.224 -3.432 -13.177 -9.410 1.339 0.252 CZ DLL 8
DLL P P P 0 1 N N N N N N 3.070 -10.714 -11.937 -2.437 -0.795 0.420 P DLL 9
DLL O2P O2P O 0 1 N N N N N N 1.785 -10.238 -11.374 -3.103 -2.074 0.753 O2P DLL 10
DLL O3P O3P O 0 1 N N N N N N 3.671 -11.944 -11.368 -2.308 0.104 1.750 O3P DLL 11
DLL O1P O1P O 0 1 N N N N N N 4.239 -9.635 -11.752 -3.308 -0.005 -0.679 O1P DLL 12
DLL "O5'" "O5'" O 0 1 N N N N N N 2.876 -10.846 -13.512 -0.969 -1.092 -0.171 "O5'" DLL 13
DLL "C5'" "C5'" C 0 1 N N N N N N 3.946 -11.377 -14.142 0.007 -1.870 0.525 "C5'" DLL 14
DLL "O4'" "O4'" O 0 1 N N N N N N 3.164 -10.188 -16.196 1.888 -0.656 -0.419 "O4'" DLL 15
DLL "O3'" "O3'" O 0 1 N N N N N N 5.695 -12.701 -16.456 2.630 -3.986 -0.467 "O3'" DLL 16
DLL "C2'" "C2'" C 0 1 N N R N N N 4.689 -10.971 -17.859 3.545 -1.981 0.595 "C2'" DLL 17
DLL "O2'" "O2'" O 0 1 N N N N N N 4.001 -12.061 -18.487 4.750 -2.697 0.317 "O2'" DLL 18
DLL "C1'" "C1'" C 0 1 N N R N N N 3.682 -9.882 -17.498 3.317 -0.856 -0.447 "C1'" DLL 19
DLL N9 N9 N 0 1 Y N N N N N 4.398 -8.595 -17.568 4.017 0.367 -0.047 N9 DLL 20
DLL C8 C8 C 0 1 Y N N N N N 4.928 -7.859 -16.415 3.508 1.375 0.717 C8 DLL 21
DLL N7 N7 N 0 1 Y N N N N N 5.642 -6.743 -17.054 4.403 2.306 0.878 N7 DLL 22
DLL C5 C5 C 0 1 Y N N N N N 5.488 -6.840 -18.378 5.540 1.956 0.229 C5 DLL 23
DLL C6 C6 C 0 1 Y N N N N N 5.905 -6.037 -19.437 6.802 2.550 0.057 C6 DLL 24
DLL CAZ CAZ C 0 1 N N N N N N 4.038 -8.331 -12.091 -4.596 0.229 -0.382 CAZ DLL 25
DLL N6 N6 N 0 1 N N N N N N 6.615 -4.925 -19.209 7.090 3.778 0.625 N6 DLL 26
DLL "C4'" "C4'" C 0 1 N N R N N N 3.956 -11.173 -15.648 1.284 -1.956 -0.314 "C4'" DLL 27
DLL N1 N1 N 0 1 Y N N N N N 5.617 -6.407 -20.700 7.712 1.904 -0.665 N1 DLL 28
DLL "C3'" "C3'" C 0 1 N N S N N N 5.208 -11.355 -16.486 2.304 -2.881 0.377 "C3'" DLL 29
DLL C2 C2 C 0 1 Y N N N N N 4.920 -7.510 -20.941 7.446 0.732 -1.211 C2 DLL 30
DLL C4 C4 C 0 1 Y N N N N N 4.752 -7.979 -18.682 5.308 0.706 -0.367 C4 DLL 31
DLL N3 N3 N 0 1 Y N N N N N 4.476 -8.276 -19.957 6.278 0.138 -1.076 N3 DLL 32
DLL HB1C HB1C H 0 0 N N N N N N 6.139 -7.904 -11.807 -5.517 0.407 -2.299 HB1C DLL 33
DLL HB2C HB2C H 0 0 N N N N N N 5.050 -7.324 -10.476 -5.061 1.955 -1.549 HB2C DLL 34
DLL HD2 HD2 H 0 1 N N N N N N 3.826 -5.249 -10.687 -6.456 2.964 0.163 HD2 DLL 35
DLL HD1 HD1 H 0 1 N N N N N N 6.578 -6.503 -13.719 -7.551 -0.741 -1.644 HD1 DLL 36
DLL HE2 HE2 H 0 1 N N N N N N 3.791 -2.971 -11.649 -8.725 3.180 1.095 HE2 DLL 37
DLL HE1 HE1 H 0 1 N N N N N N 6.587 -4.209 -14.649 -9.820 -0.525 -0.713 HE1 DLL 38
DLL HZ HZ H 0 1 N N N N N N 5.269 -2.420 -13.552 -10.405 1.434 0.661 HZ DLL 39
DLL H3P H3P H 0 1 N N N N N N 3.800 -12.583 -12.059 -1.879 0.959 1.606 H3P DLL 40
DLL "H5'1" "H5'1" H 0 0 N N N N N N 4.849 -10.901 -13.732 0.232 -1.399 1.482 "H5'1" DLL 41
DLL "H5'2" "H5'2" H 0 0 N N N N N N 3.906 -12.463 -13.971 -0.383 -2.874 0.697 "H5'2" DLL 42
DLL "H4'" "H4'" H 0 1 N N N N N N 3.444 -12.143 -15.734 1.049 -2.337 -1.308 "H4'" DLL 43
DLL "H1'" "H1'" H 0 1 N N N N N N 2.822 -9.823 -18.182 3.641 -1.178 -1.437 "H1'" DLL 44
DLL "H3'" "H3'" H 0 1 N N N N N N 5.803 -13.019 -17.345 3.312 -4.570 -0.106 "H3'" DLL 45
DLL HA HA H 0 1 N N N N N N 6.069 -10.764 -16.140 1.916 -3.233 1.333 HA DLL 46
DLL "H2'" "H2'" H 0 1 N N N N N N 5.483 -10.672 -18.559 3.560 -1.576 1.607 "H2'" DLL 47
DLL HB HB H 0 1 N N N N N N 3.849 -11.855 -19.402 4.936 -3.411 0.941 HB DLL 48
DLL H8 H8 H 0 1 N N N N N N 4.821 -8.080 -15.363 2.510 1.398 1.127 H8 DLL 49
DLL H61N H61N H 0 0 N N N N N N 6.792 -4.837 -18.229 6.417 4.240 1.150 H61N DLL 50
DLL H62N H62N H 0 0 N N N N N N 7.484 -4.978 -19.701 7.965 4.178 0.499 H62N DLL 51
DLL H2 H2 H 0 1 N N N N N N 4.710 -7.789 -21.963 8.215 0.241 -1.789 H2 DLL 52
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DLL O CAZ DOUB N N 1
DLL CB CG SING N N 2
DLL CB CAZ SING N N 3
DLL CG CD2 SING Y N 4
DLL CG CD1 DOUB Y N 5
DLL CD2 CE2 DOUB Y N 6
DLL CD1 CE1 SING Y N 7
DLL CE2 CZ SING Y N 8
DLL CE1 CZ DOUB Y N 9
DLL P O2P DOUB N N 10
DLL P O3P SING N N 11
DLL P O1P SING N N 12
DLL P "O5'" SING N N 13
DLL O1P CAZ SING N N 14
DLL "O5'" "C5'" SING N N 15
DLL "C5'" "C4'" SING N N 16
DLL "O4'" "C1'" SING N N 17
DLL "O4'" "C4'" SING N N 18
DLL "O3'" "C3'" SING N N 19
DLL "C2'" "O2'" SING N N 20
DLL "C2'" "C1'" SING N N 21
DLL "C2'" "C3'" SING N N 22
DLL "C1'" N9 SING N N 23
DLL N9 C8 SING Y N 24
DLL N9 C4 SING Y N 25
DLL C8 N7 DOUB Y N 26
DLL N7 C5 SING Y N 27
DLL C5 C6 DOUB Y N 28
DLL C5 C4 SING Y N 29
DLL C6 N6 SING N N 30
DLL C6 N1 SING Y N 31
DLL "C4'" "C3'" SING N N 32
DLL N1 C2 DOUB Y N 33
DLL C2 N3 SING Y N 34
DLL CB HB1C SING N N 35
DLL CB HB2C SING N N 36
DLL CD2 HD2 SING N N 37
DLL CD1 HD1 SING N N 38
DLL CE2 HE2 SING N N 39
DLL CE1 HE1 SING N N 40
DLL CZ HZ SING N N 41
DLL O3P H3P SING N N 42
DLL "C5'" "H5'1" SING N N 43
DLL "C5'" "H5'2" SING N N 44
DLL "C4'" "H4'" SING N N 45
DLL "C1'" "H1'" SING N N 46
DLL "O3'" "H3'" SING N N 47
DLL "C3'" HA SING N N 48
DLL "C2'" "H2'" SING N N 49
DLL "O2'" HB SING N N 50
DLL C8 H8 SING N N 51
DLL N6 H61N SING N N 52
DLL N6 H62N SING N N 53
DLL C2 H2 SING N N 54
DLL C4 N3 DOUB Y N 55
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DLL SMILES_CANONICAL CACTVS 3.352 Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)OC(=O)Cc4ccccc4)[C@@H](O)[C@H]3O
DLL SMILES CACTVS 3.352 Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)OC(=O)Cc4ccccc4)[CH](O)[CH]3O
DLL SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 c1ccc(cc1)CC(=O)O[P@](=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O
DLL SMILES "OpenEye OEToolkits" 1.6.1 c1ccc(cc1)CC(=O)OP(=O)(O)OCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O
DLL InChI InChI 1.03 InChI=1S/C18H20N5O8P/c19-16-13-17(21-8-20-16)23(9-22-13)18-15(26)14(25)11(30-18)7-29-32(27,28)31-12(24)6-10-4-2-1-3-5-10/h1-5,8-9,11,14-15,18,25-26H,6-7H2,(H,27,28)(H2,19,20,21)/t11-,14-,15-,18-/m1/s1
DLL InChIKey InChI 1.03 VUKDZGAUWUDQRZ-XKLVTHTNSA-N
#
_pdbx_chem_comp_identifier.comp_id DLL
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 1.6.1
_pdbx_chem_comp_identifier.identifier
"[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] 2-phenylethanoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DLL 'Create component' 2010-12-15 EBI
DLL 'Modify aromatic_flag' 2011-06-04 RCSB
DLL 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
DLL O O 9.582 4.662 1
DLL CB C 7.655 6.404 2
DLL CG C 8.660 7.516 3
DLL CD2 C 10.127 7.202 4
DLL CD1 C 8.199 8.944 5
DLL CE2 C 11.133 8.315 6
DLL CE1 C 9.205 10.057 7
DLL CZ C 10.671 9.742 8
DLL P P 7.571 2.436 9
DLL O2P O 8.998 2.897 10
DLL O3P O 6.144 1.975 11
DLL O1P O 7.110 3.863 12
DLL "O5'" O 8.032 1.008 13
DLL "C5'" C 7.027 -0.105 14
DLL "O4'" O 6.604 -2.744 15
DLL "O3'" O 10.129 -1.118 16
DLL "C2'" C 8.911 -3.498 17
DLL "O2'" O 10.123 -4.382 18
DLL "C1'" C 7.483 -3.959 19
DLL N9 N 7.018 -5.385 20
DLL C8 C 7.893 -6.592 21
DLL N7 N 7.018 -7.799 22
DLL C5 C 5.598 -7.342 23
DLL C6 C 4.299 -8.092 24
DLL CAZ C 8.116 4.976 25
DLL N6 N 4.299 -9.592 26
DLL "C4'" C 7.487 -1.532 27
DLL N1 N 3.000 -7.342 28
DLL "C3'" C 8.913 -1.998 29
DLL C2 C 3.000 -5.842 30
DLL C4 C 5.598 -5.842 31
DLL N3 N 4.299 -5.092 32
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
DLL O CAZ DOUBLE NONE 1
DLL CB CG SINGLE NONE 2
DLL CB CAZ SINGLE NONE 3
DLL CG CD2 DOUBLE NONE 4
DLL CG CD1 SINGLE NONE 5
DLL CD2 CE2 SINGLE NONE 6
DLL CD1 CE1 DOUBLE NONE 7
DLL CE2 CZ DOUBLE NONE 8
DLL CE1 CZ SINGLE NONE 9
DLL P O2P DOUBLE NONE 10
DLL P O3P SINGLE BEGINDASH 11
DLL P O1P SINGLE NONE 12
DLL P "O5'" SINGLE NONE 13
DLL O1P CAZ SINGLE NONE 14
DLL "O5'" "C5'" SINGLE NONE 15
DLL "C4'" "C5'" SINGLE BEGINDASH 16
DLL "O4'" "C1'" SINGLE NONE 17
DLL "O4'" "C4'" SINGLE NONE 18
DLL "C3'" "O3'" SINGLE BEGINWEDGE 19
DLL "C2'" "O2'" SINGLE BEGINWEDGE 20
DLL "C2'" "C1'" SINGLE NONE 21
DLL "C2'" "C3'" SINGLE NONE 22
DLL "C1'" N9 SINGLE BEGINDASH 23
DLL N9 C8 SINGLE NONE 24
DLL N9 C4 SINGLE NONE 25
DLL C8 N7 DOUBLE NONE 26
DLL N7 C5 SINGLE NONE 27
DLL C5 C6 DOUBLE NONE 28
DLL C5 C4 SINGLE NONE 29
DLL C6 N6 SINGLE NONE 30
DLL C6 N1 SINGLE NONE 31
DLL "C4'" "C3'" SINGLE NONE 32
DLL N1 C2 DOUBLE NONE 33
DLL C2 N3 SINGLE NONE 34
DLL C4 N3 DOUBLE NONE 35
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
DLL MurckoScaffold S1 scaffold 'O=C(Cc1ccccc1)O[PH](=O)OC[C@@H]1CC[C@H](n2cnc3cncnc32)O1' InChI=1S/C18H19N4O5P/c23-17(8-13-4-2-1-3-5-13)27-28(24)25-10-14-6-7-16(26-14)22-12-21-15-9-19-11-20-18(15)22/h1-5,9,11-12,14,16,28H,6-8,10H2/t14-,16+/m0/s1 KBODLJBBGPWHOZ-GOEBONIOSA-N
DLL adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
DLL imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
DLL phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
DLL phosphate F4 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
DLL purine F5 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
DLL pyrimidine F6 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
DLL ribose F7 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
DLL O S1 1
DLL CB S1 1
DLL CG S1 1
DLL CD2 S1 1
DLL CD1 S1 1
DLL CE2 S1 1
DLL CE1 S1 1
DLL CZ S1 1
DLL P S1 1
DLL O2P S1 1
DLL O1P S1 1
DLL "O5'" S1 1
DLL "C5'" S1 1
DLL "O4'" S1 1
DLL "C2'" S1 1
DLL "C1'" S1 1
DLL N9 S1 1
DLL C8 S1 1
DLL N7 S1 1
DLL C5 S1 1
DLL C6 S1 1
DLL CAZ S1 1
DLL "C4'" S1 1
DLL N1 S1 1
DLL "C3'" S1 1
DLL C2 S1 1
DLL C4 S1 1
DLL N3 S1 1
DLL N1 F1 1
DLL C6 F1 1
DLL C5 F1 1
DLL C4 F1 1
DLL N3 F1 1
DLL C2 F1 1
DLL N9 F1 1
DLL C8 F1 1
DLL N7 F1 1
DLL N6 F1 1
DLL C5 F2 1
DLL C4 F2 1
DLL N9 F2 1
DLL C8 F2 1
DLL N7 F2 1
DLL CG F3 1
DLL CD2 F3 1
DLL CE2 F3 1
DLL CZ F3 1
DLL CE1 F3 1
DLL CD1 F3 1
DLL O3P F4 1
DLL P F4 1
DLL O2P F4 1
DLL O1P F4 1
DLL "O5'" F4 1
DLL N7 F5 1
DLL C8 F5 1
DLL N9 F5 1
DLL C4 F5 1
DLL C5 F5 1
DLL C6 F5 1
DLL N1 F5 1
DLL C2 F5 1
DLL N3 F5 1
DLL C5 F6 1
DLL C6 F6 1
DLL N1 F6 1
DLL C2 F6 1
DLL N3 F6 1
DLL C4 F6 1
DLL "C2'" F7 1
DLL "C3'" F7 1
DLL "C4'" F7 1
DLL "O4'" F7 1
DLL "C1'" F7 1
DLL "C5'" F7 1
DLL "O5'" F7 1
DLL "O3'" F7 1
DLL "O2'" F7 1
#
_pdbe_chem_comp_rdkit_properties.comp_id DLL
_pdbe_chem_comp_rdkit_properties.exactmw 465.105
_pdbe_chem_comp_rdkit_properties.amw 465.359
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 13
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 13
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 32
_pdbe_chem_comp_rdkit_properties.NumAtoms 52
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 14
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.333
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 209.047
_pdbe_chem_comp_rdkit_properties.tpsa 192.140
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.933
_pdbe_chem_comp_rdkit_properties.CrippenMR 104.378
_pdbe_chem_comp_rdkit_properties.chi0v 15.844
_pdbe_chem_comp_rdkit_properties.chi1v 9.356
_pdbe_chem_comp_rdkit_properties.chi2v 4.094
_pdbe_chem_comp_rdkit_properties.chi3v 4.094
_pdbe_chem_comp_rdkit_properties.chi4v 2.610
_pdbe_chem_comp_rdkit_properties.chi0n 34.949
_pdbe_chem_comp_rdkit_properties.chi1n 17.514
_pdbe_chem_comp_rdkit_properties.chi2n 3.389
_pdbe_chem_comp_rdkit_properties.chi3n 3.389
_pdbe_chem_comp_rdkit_properties.chi4n 2.129
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.930
_pdbe_chem_comp_rdkit_properties.kappa1 8.448
_pdbe_chem_comp_rdkit_properties.kappa2 8.902
_pdbe_chem_comp_rdkit_properties.kappa3 4.625
_pdbe_chem_comp_rdkit_properties.Phi 2.350
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
DLL UniChem ZINC ZINC000064746689
DLL UniChem PubChem 50909902
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
DLL O -0.245 -0.264 4.973 ETKDGv3 1
DLL CB 0.683 1.774 4.150 ETKDGv3 2
DLL CG 1.478 2.203 2.945 ETKDGv3 3
DLL CD2 2.737 1.765 2.762 ETKDGv3 4
DLL CD1 0.844 3.049 1.903 ETKDGv3 5
DLL CE2 3.486 2.141 1.545 ETKDGv3 6
DLL CE1 1.524 3.382 0.799 ETKDGv3 7
DLL CZ 2.910 2.907 0.611 ETKDGv3 8
DLL P -0.773 -1.649 2.374 ETKDGv3 9
DLL O2P -2.205 -1.665 2.862 ETKDGv3 10
DLL O3P 0.123 -2.827 3.197 ETKDGv3 11
DLL O1P -0.092 -0.101 2.673 ETKDGv3 12
DLL "O5'" -0.715 -1.937 0.697 ETKDGv3 13
DLL "C5'" -1.308 -3.185 0.428 ETKDGv3 14
DLL "O4'" -1.986 -2.462 -1.766 ETKDGv3 15
DLL "O3'" 0.329 -4.589 -2.491 ETKDGv3 16
DLL "C2'" 0.298 -2.188 -2.350 ETKDGv3 17
DLL "O2'" 1.131 -2.273 -3.478 ETKDGv3 18
DLL "C1'" -1.141 -1.921 -2.755 ETKDGv3 19
DLL N9 -1.387 -0.488 -2.911 ETKDGv3 20
DLL C8 -0.912 0.328 -4.004 ETKDGv3 21
DLL N7 -0.853 1.611 -3.756 ETKDGv3 22
DLL C5 -1.291 1.751 -2.412 ETKDGv3 23
DLL C6 -1.369 2.830 -1.636 ETKDGv3 24
DLL CAZ 0.102 0.405 3.961 ETKDGv3 25
DLL N6 -1.032 4.132 -2.115 ETKDGv3 26
DLL "C4'" -1.257 -3.462 -1.080 ETKDGv3 27
DLL N1 -1.796 2.634 -0.268 ETKDGv3 28
DLL "C3'" 0.184 -3.501 -1.611 ETKDGv3 29
DLL C2 -2.076 1.436 0.194 ETKDGv3 30
DLL C4 -1.599 0.471 -1.892 ETKDGv3 31
DLL N3 -1.966 0.276 -0.664 ETKDGv3 32
DLL HB1C -0.146 2.491 4.334 ETKDGv3 33
DLL HB2C 1.335 1.781 5.051 ETKDGv3 34
DLL HD2 3.211 1.125 3.497 ETKDGv3 35
DLL HD1 -0.173 3.399 2.031 ETKDGv3 36
DLL HE2 4.501 1.789 1.408 ETKDGv3 37
DLL HE1 1.061 4.000 0.041 ETKDGv3 38
DLL HZ 3.456 3.179 -0.283 ETKDGv3 39
DLL H3P 1.041 -2.741 2.834 ETKDGv3 40
DLL "H5'1" -0.771 -4.004 0.958 ETKDGv3 41
DLL "H5'2" -2.377 -3.187 0.741 ETKDGv3 42
DLL "H4'" -1.753 -4.443 -1.258 ETKDGv3 43
DLL "H1'" -1.364 -2.431 -3.720 ETKDGv3 44
DLL "H3'" 1.302 -4.778 -2.557 ETKDGv3 45
DLL HA 0.937 -3.561 -0.789 ETKDGv3 46
DLL "H2'" 0.656 -1.391 -1.656 ETKDGv3 47
DLL HB 2.063 -2.278 -3.136 ETKDGv3 48
DLL H8 -0.603 -0.088 -4.954 ETKDGv3 49
DLL H61N -1.096 4.955 -1.475 ETKDGv3 50
DLL H62N -0.716 4.282 -3.099 ETKDGv3 51
DLL H2 -2.387 1.316 1.222 ETKDGv3 52
#