Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : DJ9    

Bonds between two atoms of the molecule

Total Number of Bonds: 54


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C15 N3 C N sing 1.37 N Y
2 C15 C16 C C doub 1.34 N Y
3 N3 C14 N C sing 1.38 N Y
4 C16 C17 C C sing 1.46 N Y
5 C14 C17 C C doub 1.41 N Y
6 C14 C13 C C sing 1.39 N Y
7 C17 C18 C C sing 1.4 N Y
8 C13 C12 C C doub 1.39 N Y
9 C18 C19 C C doub 1.36 N Y
10 C12 C19 C C sing 1.4 N Y
11 C12 C11 C C sing 1.48 N N
12 N2 C11 N C sing 1.37 N Y
13 N2 C10 N C sing 1.38 N Y
14 C11 N4 C N doub 1.31 N Y
15 C10 C9 C C doub 1.39 N Y
16 C10 C20 C C sing 1.41 N Y
17 C9 C8 C C sing 1.38 N Y
18 N4 C20 N C sing 1.35 N Y
19 C20 C7 C C doub 1.41 N Y
20 C8 N1 C N doub 1.32 N Y
21 C7 N1 C N sing 1.33 N Y
22 C7 C6 C C sing 1.48 N N
23 C23 O3 C O sing 1.43 N N
24 C21 C6 C C doub 1.39 N Y
25 C21 C22 C C sing 1.38 N Y
26 C6 C5 C C sing 1.4 N Y
27 O3 C22 O C sing 1.36 N N
28 C22 C2 C C doub 1.39 N Y
29 C5 C3 C C doub 1.38 N Y
30 C2 C3 C C sing 1.39 N Y
31 C2 O1 C O sing 1.36 N N
32 C3 O2 C O sing 1.36 N N
33 C1 O1 C O sing 1.43 N N
34 O2 C4 O C sing 1.43 N N
35 C1 H1 C H sing 1.09 N N
36 C1 H2 C H sing 1.09 N N
37 C1 H3 C H sing 1.09 N N
38 C13 H4 C H sing 1.08 N N
39 C15 H5 C H sing 1.08 N N
40 C16 H6 C H sing 1.08 N N
41 C18 H7 C H sing 1.08 N N
42 C19 H8 C H sing 1.08 N N
43 C21 H9 C H sing 1.08 N N
44 C23 H10 C H sing 1.09 N N
45 C23 H11 C H sing 1.09 N N
46 C23 H12 C H sing 1.09 N N
47 C4 H13 C H sing 1.09 N N
48 C4 H14 C H sing 1.09 N N
49 C4 H15 C H sing 1.09 N N
50 C5 H16 C H sing 1.08 N N
51 C8 H17 C H sing 1.08 N N
52 C9 H18 C H sing 1.08 N N
53 N2 H19 N H sing 0.97 N N
54 N3 H20 N H sing 0.97 N N