Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : DJ9

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 50


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 4.207 3.696 0.955
2 C10 C C2 N Y N 0 -0.595 -3.167 -0.175
3 C11 C C3 N Y N 0 -2.011 -1.482 0.008
4 C12 C C4 N Y N 0 -3.266 -0.711 0.13
5 C13 C C5 N Y N 0 -3.221 0.678 0.194
6 C14 C C6 N Y N 0 -4.401 1.4 0.303
7 C15 C C7 N Y N 0 -6.035 2.932 0.479
8 C16 C C8 N Y N 0 -6.664 1.745 0.461
9 C17 C C9 N Y N 0 -5.631 0.714 0.347
10 C18 C C10 N Y N 0 -5.659 -0.683 0.281
11 C19 C C11 N Y N 0 -4.495 -1.383 0.174
12 C2 C C12 N Y N 0 3.716 1.666 -0.184
13 C20 C C13 N Y N 0 0.106 -1.945 -0.154
14 C21 C C14 N Y N 0 3.528 -0.66 0.391
15 C22 C C15 N Y N 0 4.245 0.523 0.407
16 C23 C C16 N N N 0 5.95 -0.642 1.588
17 C3 C C17 N Y N 0 2.466 1.622 -0.792
18 C4 C C18 N N N 0 0.66 2.625 -1.971
19 C5 C C19 N Y N 0 1.748 0.44 -0.814
20 C6 C C20 N Y N 0 2.279 -0.709 -0.227
21 C7 C C21 N Y N 0 1.51 -1.974 -0.246
22 C8 C C22 N Y N 0 1.504 -4.288 -0.37
23 C9 C C23 N Y N 0 0.128 -4.35 -0.285
24 N1 N N1 N Y N 0 2.145 -3.134 -0.348
25 N2 N N2 N Y N 0 -1.929 -2.849 -0.067
26 N3 N N3 N Y N 0 -4.684 2.746 0.386
27 N4 N N4 N Y N 0 -0.807 -0.963 -0.043
28 O1 O O1 N N N 0 4.42 2.83 -0.162
29 O2 O O2 N N N 0 1.949 2.742 -1.364
30 O3 O O3 N N N 0 5.468 0.569 1.002
31 H1 H H1 N N N 0 4.828 4.586 0.848
32 H2 H H2 N N N 0 3.158 3.988 0.993
33 H3 H H3 N N N 0 4.473 3.176 1.875
34 H4 H H4 N N N 0 -2.272 1.193 0.16
35 H5 H H5 N N N 0 -6.524 3.892 0.557
36 H6 H H6 N N N 0 -7.73 1.582 0.52
37 H7 H H7 N N N 0 -6.604 -1.206 0.314
38 H8 H H8 N N N 0 -4.52 -2.461 0.119
39 H9 H H9 N N N 0 3.941 -1.548 0.846
40 H10 H H10 N N N 0 5.259 -0.969 2.365
41 H11 H H11 N N N 0 6.025 -1.412 0.821
42 H12 H H12 N N N 0 6.932 -0.467 2.026
43 H13 H H13 N N N 0 0.366 3.588 -2.388
44 H14 H H14 N N N 0 0.7 1.881 -2.766
45 H15 H H15 N N N 0 -0.068 2.317 -1.221
46 H16 H H16 N N N 0 0.777 0.406 -1.286
47 H17 H H17 N N N 0 2.07 -5.205 -0.455
48 H18 H H18 N N N 0 -0.38 -5.303 -0.304
49 H19 H H19 N N N 0 -2.671 -3.473 -0.052
50 H20 H H20 N N N 0 -4.022 3.455 0.379