Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : DGT    

Bonds between two atoms of the molecule

Total Number of Bonds: 49


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 PG O1G P O sing 1.61 N N
2 PG O2G P O sing 1.61 N N
3 O1G HO1G O H sing 0.97 N N
4 O2G HO2G O H sing 0.97 N N
5 O3G PG O P doub 1.48 N N
6 O3B PG O P sing 1.61 N N
7 PB O3B P O sing 1.61 N N
8 PB O1B P O sing 1.61 N N
9 PB O3A P O sing 1.61 N N
10 O1B HO1B O H sing 0.97 N N
11 O2B PB O P doub 1.48 N N
12 PA O3A P O sing 1.61 N N
13 PA O1A P O sing 1.61 N N
14 O1A HO1A O H sing 0.97 N N
15 O2A PA O P doub 1.48 N N
16 O5' PA O P sing 1.61 N N
17 O5' C5' O C sing 1.43 N N
18 C5' H5' C H sing 1.09 N N
19 C5' H5'A C H sing 1.09 N N
20 C4' C5' C C sing 1.53 N N
21 C4' H4' C H sing 1.09 N N
22 O4' C4' O C sing 1.44 N N
23 C3' C4' C C sing 1.55 N N
24 C3' O3' C O sing 1.43 N N
25 C3' H3' C H sing 1.09 N N
26 O3' HO3' O H sing 0.97 N N
27 C2' C3' C C sing 1.55 N N
28 C2' C1' C C sing 1.54 N N
29 C2' H2' C H sing 1.09 N N
30 C2' H2'A C H sing 1.09 N N
31 C1' O4' C O sing 1.44 N N
32 C1' H1' C H sing 1.09 N N
33 N9 C1' N C sing 1.46 N N
34 N9 C4 N C sing 1.37 N Y
35 C8 N9 C N sing 1.37 N Y
36 C8 H8 C H sing 1.08 N N
37 N7 C8 N C doub 1.3 N Y
38 N7 C5 N C sing 1.36 N Y
39 C5 C6 C C sing 1.41 N N
40 C5 C4 C C doub 1.4 N Y
41 C6 N1 C N sing 1.35 N N
42 O6 C6 O C doub 1.22 N N
43 N1 C2 N C sing 1.36 N N
44 C2 N3 C N doub 1.31 N N
45 C2 N2 C N sing 1.37 N N
46 N2 HN2 N H sing 0.97 N N
47 N2 HN2A N H sing 0.97 N N
48 C4 N3 C N sing 1.34 N N
49 N1 H16 N H sing 0.97 N N