Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : DGT

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 47


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 PG P PG N N N 0 -6.722 1.739 -0.798
2 O1G O O1G N N N 0 -7.321 0.703 -1.876
3 O2G O O2G N N N 0 -6.586 3.195 -1.471
4 O3G O O3G N N N 0 -7.629 1.817 0.368
5 O3B O O3B N N N 0 -5.271 1.232 -0.317
6 PB P PB S N N 0 -4.764 0.06 0.662
7 O1B O O1B N N N 0 -5.022 0.489 2.192
8 O2B O O2B N N N 0 -5.508 -1.185 0.368
9 O3A O O3A N N N 0 -3.19 -0.189 0.432
10 PA P PA R N N 0 -2.192 -1.411 0.751
11 O1A O O1A N N N 0 -1.875 -1.448 2.329
12 O2A O O2A N N N 0 -2.828 -2.685 0.346
13 O5' O O5' N N N 0 -0.821 -1.212 -0.068
14 C5' C C5' N N N 0 0.228 -2.183 -0.079
15 C4' C C4' R N N 0 1.38 -1.68 -0.95
16 O4' O O4' N N N 0 2.03 -0.55 -0.33
17 C3' C C3' S N N 0 2.503 -2.744 -1.038
18 O3' O O3' N N N 0 2.243 -3.674 -2.091
19 C2' C C2' N N N 0 3.746 -1.879 -1.358
20 C1' C C1' R N N 0 3.348 -0.46 -0.898
21 N9 N N9 N Y N 0 4.294 0.02 0.112
22 C8 C C8 N Y N 0 4.145 -0.07 1.466
23 N7 N N7 N Y N 0 5.176 0.458 2.059
24 C5 C C5 N Y N 0 6.045 0.916 1.125
25 C6 C C6 N N N 0 7.301 1.565 1.183
26 O6 O O6 N N N 0 7.822 1.824 2.254
27 N1 N N1 N N N 0 7.908 1.891 0.021
28 C2 C C2 N N N 0 7.317 1.597 -1.172
29 N2 N N2 N N N 0 7.957 1.939 -2.336
30 N3 N N3 N N N 0 6.151 0.994 -1.238
31 C4 C C4 N Y N 0 5.492 0.636 -0.13
32 HO1G H HO1G N N N 0 -6.777 0.602 -2.669
33 HO2G H HO2G N N N 0 -7.424 3.563 -1.785
34 HO1B H HO1B N N N 0 -4.564 1.299 2.456
35 HO1A H HO1A N N N 0 -1.457 -0.644 2.665
36 H5' H H5' N N N 0 0.585 -2.344 0.939
37 H5'A H H5'A N N N 0 -0.151 -3.122 -0.483
38 H4' H H4' N N N 0 1.021 -1.418 -1.945
39 H3' H H3' N N N 0 2.624 -3.262 -0.086
40 HO3' H HO3' N N N 0 2.918 -4.36 -2.186
41 H2' H H2' N N N 0 4.613 -2.234 -0.8
42 H2'A H H2'A N N N 0 3.951 -1.888 -2.429
43 H1' H H1' N N N 0 3.338 0.218 -1.752
44 H16 H H16 N N N 0 8.77 2.336 0.035
45 H8 H H8 N N N 0 3.298 -0.513 1.969
46 HN2 H HN2 N N N 0 8.818 2.385 -2.303
47 HN2A H HN2A N N N 0 7.549 1.737 -3.192