data_DGT
#
_chem_comp.id DGT
_chem_comp.name "2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H16 N5 O13 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 507.181
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DGT
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1HK8
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DGT PG PG P 0 1 N N N N N N 32.266 78.871 76.218 -6.722 1.739 -0.798 P1 DGT 1
DGT O1G O1G O 0 1 N N N N N N 31.153 79.985 76.366 -7.321 0.703 -1.876 O1 DGT 2
DGT O2G O2G O 0 1 N N N N N N 33.145 78.551 77.503 -6.586 3.195 -1.471 O2 DGT 3
DGT O3G O3G O 0 1 N N N N N N 31.600 77.506 75.758 -7.629 1.817 0.368 O3 DGT 4
DGT O3B O3B O 0 1 N N N N N N 33.211 79.424 75.063 -5.271 1.232 -0.317 O4 DGT 5
DGT PB PB P 0 1 N N S N N N 34.610 78.768 74.667 -4.764 0.060 0.662 P2 DGT 6
DGT O1B O1B O 0 1 N N N N N N 34.597 77.173 74.731 -5.022 0.489 2.192 O5 DGT 7
DGT O2B O2B O 0 1 N N N N N N 34.904 79.361 73.231 -5.508 -1.185 0.368 O6 DGT 8
DGT O3A O3A O 0 1 N N N N N N 35.682 79.283 75.741 -3.190 -0.189 0.432 O7 DGT 9
DGT PA PA P 0 1 N N R N N N 36.293 80.771 75.717 -2.192 -1.411 0.751 P3 DGT 10
DGT O1A O1A O 0 1 N N N N N N 36.826 81.090 77.182 -1.875 -1.448 2.329 O8 DGT 11
DGT O2A O2A O 0 1 N N N N N N 37.451 80.843 74.624 -2.828 -2.685 0.346 O9 DGT 12
DGT "O5'" "O5'" O 0 1 N N N N N N 35.068 81.728 75.281 -0.821 -1.212 -0.068 O10 DGT 13
DGT "C5'" "C5'" C 0 1 N N N N N N 34.201 82.274 76.270 0.228 -2.183 -0.079 C1 DGT 14
DGT "C4'" "C4'" C 0 1 N N R N N N 33.306 83.380 75.714 1.380 -1.680 -0.950 C2 DGT 15
DGT "O4'" "O4'" O 0 1 N N N N N N 34.029 84.594 75.478 2.030 -0.550 -0.330 O11 DGT 16
DGT "C3'" "C3'" C 0 1 N N S N N N 32.567 83.020 74.433 2.503 -2.744 -1.038 C3 DGT 17
DGT "O3'" "O3'" O 0 1 N N N N N N 31.175 82.994 74.711 2.243 -3.674 -2.091 O12 DGT 18
DGT "C2'" "C2'" C 0 1 N N N N N N 32.894 84.114 73.428 3.746 -1.879 -1.358 C4 DGT 19
DGT "C1'" "C1'" C 0 1 N N R N N N 33.803 85.105 74.157 3.348 -0.460 -0.898 C5 DGT 20
DGT N9 N9 N 0 1 Y N N N N N 35.124 85.396 73.513 4.294 0.020 0.112 N1 DGT 21
DGT C8 C8 C 0 1 Y N N N N N 35.944 84.585 72.778 4.145 -0.070 1.466 C6 DGT 22
DGT N7 N7 N 0 1 Y N N N N N 37.088 85.251 72.377 5.176 0.458 2.059 N2 DGT 23
DGT C5 C5 C 0 1 Y N N N N N 37.028 86.519 72.862 6.045 0.916 1.125 C7 DGT 24
DGT C6 C6 C 0 1 N N N N N N 37.806 87.806 72.885 7.301 1.565 1.183 C8 DGT 25
DGT O6 O6 O 0 1 N N N N N N 38.913 87.924 72.312 7.822 1.824 2.254 O13 DGT 26
DGT N1 N1 N 0 1 N N N N N N 37.324 88.886 73.533 7.908 1.891 0.021 N3 DGT 27
DGT C2 C2 C 0 1 N N N N N N 36.144 88.892 74.184 7.317 1.597 -1.172 C9 DGT 28
DGT N2 N2 N 0 1 N N N N N N 35.763 90.040 74.793 7.957 1.939 -2.336 N4 DGT 29
DGT N3 N3 N 0 1 N N N N N N 35.343 87.792 74.245 6.151 0.994 -1.238 N5 DGT 30
DGT C4 C4 C 0 1 Y N N N N N 35.765 86.571 73.584 5.492 0.636 -0.130 C10 DGT 31
DGT HO1G HO1G H 0 0 N N N N N N 30.930 80.090 77.283 -6.777 0.602 -2.669 H1 DGT 32
DGT HO2G HO2G H 0 0 N N N N N N 34.060 78.487 77.254 -7.424 3.563 -1.785 H2 DGT 33
DGT HO1B HO1B H 0 0 N N N N N N 34.594 76.820 73.849 -4.564 1.299 2.456 H3 DGT 34
DGT HO1A HO1A H 0 0 N N N N N N 37.774 81.154 77.168 -1.457 -0.644 2.665 H4 DGT 35
DGT "H5'" "H5'" H 0 1 N N N N N N 33.560 81.468 76.656 0.585 -2.344 0.939 H5 DGT 36
DGT "H5'A" "H5'A" H 0 0 N N N N N N 34.827 82.713 77.061 -0.151 -3.122 -0.483 H6 DGT 37
DGT "H4'" "H4'" H 0 1 N N N N N N 32.558 83.520 76.508 1.021 -1.418 -1.945 H7 DGT 38
DGT "H3'" "H3'" H 0 1 N N N N N N 32.861 82.036 74.038 2.624 -3.262 -0.086 H8 DGT 39
DGT "HO3'" "HO3'" H 0 0 N N N N N N 31.039 82.988 75.651 2.918 -4.360 -2.186 H9 DGT 40
DGT "H2'" "H2'" H 0 1 N N N N N N 33.406 83.692 72.551 4.613 -2.234 -0.800 H10 DGT 41
DGT "H2'A" "H2'A" H 0 0 N N N N N N 31.981 84.605 73.061 3.951 -1.888 -2.429 H11 DGT 42
DGT "H1'" "H1'" H 0 1 N N N N N N 33.273 86.069 74.140 3.338 0.218 -1.752 H12 DGT 43
DGT H8 H8 H 0 1 N N N N N N 35.726 83.554 72.541 3.298 -0.513 1.969 H13 DGT 44
DGT HN2 HN2 H 0 1 N N N N N N 36.453 90.751 74.659 8.818 2.385 -2.303 H14 DGT 45
DGT HN2A HN2A H 0 0 N N N N N N 34.912 90.160 75.304 7.549 1.737 -3.192 H15 DGT 46
DGT H16 H16 H 0 1 N N N N N N 37.869 89.724 73.530 8.770 2.336 0.035 H16 DGT 47
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DGT PG O1G SING N N 1
DGT PG O2G SING N N 2
DGT O1G HO1G SING N N 3
DGT O2G HO2G SING N N 4
DGT O3G PG DOUB N N 5
DGT O3B PG SING N N 6
DGT PB O3B SING N N 7
DGT PB O1B SING N N 8
DGT PB O3A SING N N 9
DGT O1B HO1B SING N N 10
DGT O2B PB DOUB N N 11
DGT PA O3A SING N N 12
DGT PA O1A SING N N 13
DGT O1A HO1A SING N N 14
DGT O2A PA DOUB N N 15
DGT "O5'" PA SING N N 16
DGT "O5'" "C5'" SING N N 17
DGT "C5'" "H5'" SING N N 18
DGT "C5'" "H5'A" SING N N 19
DGT "C4'" "C5'" SING N N 20
DGT "C4'" "H4'" SING N N 21
DGT "O4'" "C4'" SING N N 22
DGT "C3'" "C4'" SING N N 23
DGT "C3'" "O3'" SING N N 24
DGT "C3'" "H3'" SING N N 25
DGT "O3'" "HO3'" SING N N 26
DGT "C2'" "C3'" SING N N 27
DGT "C2'" "C1'" SING N N 28
DGT "C2'" "H2'" SING N N 29
DGT "C2'" "H2'A" SING N N 30
DGT "C1'" "O4'" SING N N 31
DGT "C1'" "H1'" SING N N 32
DGT N9 "C1'" SING N N 33
DGT N9 C4 SING Y N 34
DGT C8 N9 SING Y N 35
DGT C8 H8 SING N N 36
DGT N7 C8 DOUB Y N 37
DGT N7 C5 SING Y N 38
DGT C5 C6 SING N N 39
DGT C5 C4 DOUB Y N 40
DGT C6 N1 SING N N 41
DGT O6 C6 DOUB N N 42
DGT N1 C2 SING N N 43
DGT C2 N3 DOUB N N 44
DGT C2 N2 SING N N 45
DGT N2 HN2 SING N N 46
DGT N2 HN2A SING N N 47
DGT C4 N3 SING N N 48
DGT N1 H16 SING N N 49
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DGT SMILES ACDLabs 10.04 O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)CC3O
DGT SMILES_CANONICAL CACTVS 3.341 NC1=Nc2n(cnc2C(=O)N1)[C@H]3C[C@H](O)[C@@H](CO[P@](O)(=O)O[P@](O)(=O)O[P](O)(O)=O)O3
DGT SMILES CACTVS 3.341 NC1=Nc2n(cnc2C(=O)N1)[CH]3C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3
DGT SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@@](=O)(O)OP(=O)(O)O)O)N=C(NC2=O)N
DGT SMILES "OpenEye OEToolkits" 1.5.0 c1nc2c(n1C3CC(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)N=C(NC2=O)N
DGT InChI InChI 1.03 InChI=1S/C10H16N5O13P3/c11-10-13-8-7(9(17)14-10)12-3-15(8)6-1-4(16)5(26-6)2-25-30(21,22)28-31(23,24)27-29(18,19)20/h3-6,16H,1-2H2,(H,21,22)(H,23,24)(H2,18,19,20)(H3,11,13,14,17)/t4-,5+,6+/m0/s1
DGT InChIKey InChI 1.03 HAAZLUGHYHWQIW-KVQBGUIXSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DGT "SYSTEMATIC NAME" ACDLabs 10.04 "2'-deoxyguanosine 5'-(tetrahydrogen triphosphate)"
DGT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[(2R,3S,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] phosphono hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DGT 'Create component' 1999-07-08 RCSB
DGT 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id DGT
_pdbe_chem_comp_drugbank_details.drugbank_id DB02181
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name "2'-Deoxyguanosine-5'-Triphosphate"
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 2564-35-4
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id DGT
_pdbe_chem_comp_synonyms.name "2'-Deoxyguanosine-5'-Triphosphate"
_pdbe_chem_comp_synonyms.provenance DrugBank
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id DGT
_pdbe_chem_comp_drugbank_classification.drugbank_id DB02181
_pdbe_chem_comp_drugbank_classification.parent "Purine 2'-deoxyribonucleoside triphosphates"
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Purine nucleotides'
_pdbe_chem_comp_drugbank_classification.superclass 'Nucleosides, nucleotides, and analogues'
_pdbe_chem_comp_drugbank_classification.description
"This compound belongs to the class of organic compounds known as purine 2'-deoxyribonucleoside triphosphates. These are purine nucleotides with triphosphate group  linked to the ribose moiety lacking a hydroxyl group at position 2."
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
DGT DB02181 'Nucleoside diphosphate kinase A' Humans P15531 unknown 1
DGT DB02181 'Anaerobic ribonucleoside-triphosphate reductase' 'Enterobacteria phage T4' P07071 unknown 2
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
DGT PG P 19.986 3.710 1
DGT O1G O 21.201 4.589 2
DGT O2G O 20.865 2.495 3
DGT O3G O 19.106 4.925 4
DGT O3B O 18.771 2.830 5
DGT PB P 17.401 3.442 6
DGT O1B O 18.014 4.812 7
DGT O2B O 16.789 2.073 8
DGT O3A O 16.032 4.055 9
DGT PA P 14.817 3.175 10
DGT O1A O 15.697 1.960 11
DGT O2A O 13.938 4.391 12
DGT "O5'" O 13.602 2.296 13
DGT "C5'" C 12.233 2.908 14
DGT "C4'" C 11.018 2.029 15
DGT "O4'" O 11.015 0.529 16
DGT "C3'" C 9.592 2.495 17
DGT "O3'" O 9.131 3.922 18
DGT "C2'" C 8.708 1.283 19
DGT "C1'" C 9.588 0.068 20
DGT N9 N 9.122 -1.358 21
DGT C8 C 9.997 -2.565 22
DGT N7 N 9.122 -3.772 23
DGT C5 C 7.702 -3.315 24
DGT C6 C 6.404 -4.065 25
DGT O6 O 6.404 -5.565 26
DGT N1 N 5.104 -3.315 27
DGT C2 C 5.104 -1.815 28
DGT N2 N 3.805 -1.065 29
DGT N3 N 6.404 -1.065 30
DGT C4 C 7.702 -1.815 31
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
DGT PG O1G SINGLE NONE 1
DGT PG O2G SINGLE NONE 2
DGT O3G PG DOUBLE NONE 3
DGT O3B PG SINGLE NONE 4
DGT PB O3B SINGLE NONE 5
DGT PB O1B SINGLE BEGINDASH 6
DGT PB O3A SINGLE NONE 7
DGT O2B PB DOUBLE NONE 8
DGT PA O3A SINGLE NONE 9
DGT PA O1A SINGLE BEGINWEDGE 10
DGT O2A PA DOUBLE NONE 11
DGT "O5'" PA SINGLE NONE 12
DGT "O5'" "C5'" SINGLE NONE 13
DGT "C4'" "C5'" SINGLE BEGINWEDGE 14
DGT "O4'" "C4'" SINGLE NONE 15
DGT "C3'" "C4'" SINGLE NONE 16
DGT "C3'" "O3'" SINGLE BEGINDASH 17
DGT "C2'" "C3'" SINGLE NONE 18
DGT "C2'" "C1'" SINGLE NONE 19
DGT "C1'" "O4'" SINGLE NONE 20
DGT "C1'" N9 SINGLE BEGINWEDGE 21
DGT N9 C4 SINGLE NONE 22
DGT C8 N9 SINGLE NONE 23
DGT N7 C8 DOUBLE NONE 24
DGT N7 C5 SINGLE NONE 25
DGT C5 C6 SINGLE NONE 26
DGT C5 C4 DOUBLE NONE 27
DGT C6 N1 SINGLE NONE 28
DGT O6 C6 DOUBLE NONE 29
DGT N1 C2 SINGLE NONE 30
DGT C2 N3 DOUBLE NONE 31
DGT C2 N2 SINGLE NONE 32
DGT C4 N3 SINGLE NONE 33
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
DGT MurckoScaffold S1 scaffold 'O=c1[nH]cnc2c1ncn2[C@H]1CCCO1' InChI=1S/C9H10N4O2/c14-9-7-8(10-4-11-9)13(5-12-7)6-2-1-3-15-6/h4-6H,1-3H2,(H,10,11,14)/t6-/m1/s1 JBXHFRZBULGPSC-ZCFIWIBFSA-N
DGT deoxyribose F1 fragment 'OCC1OC[CH2]C1O' InChI=1S/C5H10O3/c6-3-5-4(7)1-2-8-5/h4-7H,1-3H2 NSMOSDAEGJTOIQ-UHFFFAOYSA-N
DGT imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
DGT phosphate F3 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
DGT purine F4 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
DGT pyrimidine F5 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
DGT "C4'" S1 1
DGT "O4'" S1 1
DGT "C3'" S1 1
DGT "C2'" S1 1
DGT "C1'" S1 1
DGT N9 S1 1
DGT C8 S1 1
DGT N7 S1 1
DGT C5 S1 1
DGT C6 S1 1
DGT O6 S1 1
DGT N1 S1 1
DGT C2 S1 1
DGT N3 S1 1
DGT C4 S1 1
DGT "C1'" F1 1
DGT "C2'" F1 1
DGT "C3'" F1 1
DGT "O3'" F1 1
DGT "C4'" F1 1
DGT "O4'" F1 1
DGT "C5'" F1 1
DGT "O5'" F1 1
DGT C5 F2 1
DGT C4 F2 1
DGT N9 F2 1
DGT C8 F2 1
DGT N7 F2 1
DGT O1G F3 1
DGT PG F3 1
DGT O3G F3 1
DGT O2G F3 1
DGT O3B F3 1
DGT O3B F3 2
DGT PB F3 2
DGT O2B F3 2
DGT O1B F3 2
DGT O3A F3 2
DGT O3A F3 3
DGT PA F3 3
DGT O2A F3 3
DGT O1A F3 3
DGT "O5'" F3 3
DGT N7 F4 1
DGT C8 F4 1
DGT N9 F4 1
DGT C4 F4 1
DGT C5 F4 1
DGT C6 F4 1
DGT N1 F4 1
DGT C2 F4 1
DGT N3 F4 1
DGT C5 F5 1
DGT C6 F5 1
DGT N1 F5 1
DGT C2 F5 1
DGT N3 F5 1
DGT C4 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id DGT
_pdbe_chem_comp_rdkit_properties.exactmw 506.996
_pdbe_chem_comp_rdkit_properties.amw 507.182
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 18
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 8
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 7
_pdbe_chem_comp_rdkit_properties.NumHBA 17
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 31
_pdbe_chem_comp_rdkit_properties.NumAtoms 47
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 21
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 193.673
_pdbe_chem_comp_rdkit_properties.tpsa 278.870
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.216
_pdbe_chem_comp_rdkit_properties.CrippenMR 93.990
_pdbe_chem_comp_rdkit_properties.chi0v 16.568
_pdbe_chem_comp_rdkit_properties.chi1v 11.329
_pdbe_chem_comp_rdkit_properties.chi2v 6.289
_pdbe_chem_comp_rdkit_properties.chi3v 6.289
_pdbe_chem_comp_rdkit_properties.chi4v 4.495
_pdbe_chem_comp_rdkit_properties.chi0n 29.885
_pdbe_chem_comp_rdkit_properties.chi1n 14.330
_pdbe_chem_comp_rdkit_properties.chi2n 2.774
_pdbe_chem_comp_rdkit_properties.chi3n 2.774
_pdbe_chem_comp_rdkit_properties.chi4n 1.820
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.520
_pdbe_chem_comp_rdkit_properties.kappa1 10.607
_pdbe_chem_comp_rdkit_properties.kappa2 8.440
_pdbe_chem_comp_rdkit_properties.kappa3 6.044
_pdbe_chem_comp_rdkit_properties.Phi 2.888
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
DGT UniChem DrugBank DB02181
DGT UniChem 'KEGG LIGAND' C00286
DGT UniChem ChEBI 16497
DGT UniChem ZINC ZINC000008215755
DGT UniChem eMolecules 5747847
DGT UniChem fdasrs 8C2O37Y44Q
DGT UniChem SureChEMBL SCHEMBL80609
DGT UniChem HMDB HMDB0001440
DGT UniChem PubChem 135398599
DGT UniChem NMRShiftDB 60020652
DGT UniChem ACTor 93919-41-6
DGT UniChem BindingDb 21687
DGT UniChem MetaboLights MTBLC16497
DGT UniChem BRENDA 219
DGT UniChem BRENDA 28085
DGT UniChem BRENDA 33411
DGT UniChem BRENDA 5697
DGT UniChem BRENDA 72086
DGT UniChem BRENDA 7591
DGT UniChem BRENDA 9631
DGT UniChem ChemicalBook CB7266885
DGT UniChem 'Probes And Drugs' PD060117
DGT UniChem Nikkaji J192.065K
DGT UniChem 'PubChem TPHARMA' 15407157
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
DGT PG 7.045 2.120 0.259 ETKDGv3 1
DGT O1G 8.139 1.083 1.032 ETKDGv3 2
DGT O2G 7.174 1.935 -1.419 ETKDGv3 3
DGT O3G 7.393 3.546 0.619 ETKDGv3 4
DGT O3B 5.449 1.807 0.761 ETKDGv3 5
DGT PB 5.171 0.134 0.609 ETKDGv3 6
DGT O1B 5.627 -0.405 -0.934 ETKDGv3 7
DGT O2B 5.953 -0.602 1.677 ETKDGv3 8
DGT O3A 3.501 -0.125 0.823 ETKDGv3 9
DGT PA 3.231 -1.807 0.878 ETKDGv3 10
DGT O1A 3.982 -2.596 -0.420 ETKDGv3 11
DGT O2A 3.768 -2.364 2.178 ETKDGv3 12
DGT "O5'" 1.553 -2.103 0.822 ETKDGv3 13
DGT "C5'" 1.055 -1.585 -0.389 ETKDGv3 14
DGT "C4'" -0.456 -1.822 -0.451 ETKDGv3 15
DGT "O4'" -1.087 -1.143 0.608 ETKDGv3 16
DGT "C3'" -1.059 -1.326 -1.772 ETKDGv3 17
DGT "O3'" -1.397 -2.405 -2.604 ETKDGv3 18
DGT "C2'" -2.303 -0.583 -1.344 ETKDGv3 19
DGT "C1'" -2.381 -0.828 0.156 ETKDGv3 20
DGT N9 -2.884 0.353 0.859 ETKDGv3 21
DGT C8 -2.615 0.693 2.228 ETKDGv3 22
DGT N7 -3.535 1.430 2.780 ETKDGv3 23
DGT C5 -4.506 1.596 1.756 ETKDGv3 24
DGT C6 -5.828 2.205 1.845 ETKDGv3 25
DGT O6 -6.214 2.802 2.884 ETKDGv3 26
DGT N1 -6.677 2.087 0.693 ETKDGv3 27
DGT C2 -6.207 1.357 -0.464 ETKDGv3 28
DGT N2 -7.051 1.211 -1.605 ETKDGv3 29
DGT N3 -5.014 0.821 -0.468 ETKDGv3 30
DGT C4 -4.150 0.965 0.669 ETKDGv3 31
DGT HO1G 9.009 1.261 0.593 ETKDGv3 32
DGT HO2G 6.439 2.485 -1.791 ETKDGv3 33
DGT HO1B 6.520 -0.817 -0.814 ETKDGv3 34
DGT HO1A 3.716 -3.545 -0.328 ETKDGv3 35
DGT "H5'" 1.242 -0.488 -0.456 ETKDGv3 36
DGT "H5'A" 1.525 -2.100 -1.257 ETKDGv3 37
DGT "H4'" -0.647 -2.914 -0.331 ETKDGv3 38
DGT "H3'" -0.380 -0.623 -2.311 ETKDGv3 39
DGT "HO3'" -0.543 -2.747 -2.979 ETKDGv3 40
DGT "H2'" -3.217 -0.955 -1.856 ETKDGv3 41
DGT "H2'A" -2.181 0.503 -1.560 ETKDGv3 42
DGT "H1'" -3.056 -1.689 0.366 ETKDGv3 43
DGT H8 -1.741 0.355 2.767 ETKDGv3 44
DGT HN2 -8.007 1.630 -1.613 ETKDGv3 45
DGT HN2A -6.722 0.682 -2.444 ETKDGv3 46
DGT H16 -7.631 2.511 0.700 ETKDGv3 47
#