Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : DCP    

Bonds between two atoms of the molecule

Total Number of Bonds: 45


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1 C2 N C sing 1.34 N N
2 N1 C6 N C sing 1.36 N N
3 N1 C1' N C sing 1.46 N N
4 C2 N3 C N sing 1.33 N N
5 C2 O2 C O doub 1.22 N N
6 N3 C4 N C doub 1.33 N N
7 C4 C5 C C sing 1.41 N N
8 C4 N4 C N sing 1.38 N N
9 C5 C6 C C doub 1.35 N N
10 C5 H5 C H sing 1.08 N N
11 C6 H6 C H sing 1.08 N N
12 N4 HN41 N H sing 0.97 N N
13 N4 HN42 N H sing 0.97 N N
14 C1' C2' C C sing 1.54 N N
15 C1' O4' C O sing 1.44 N N
16 C1' H1' C H sing 1.09 N N
17 C2' C3' C C sing 1.55 N N
18 C2' H2'1 C H sing 1.09 N N
19 C2' H2'2 C H sing 1.09 N N
20 C3' C4' C C sing 1.55 N N
21 C3' O3' C O sing 1.43 N N
22 C3' H3' C H sing 1.09 N N
23 C4' O4' C O sing 1.45 N N
24 C4' C5' C C sing 1.53 N N
25 C4' H4' C H sing 1.09 N N
26 O3' HO3' O H sing 0.97 N N
27 C5' O5' C O sing 1.43 N N
28 C5' H5'1 C H sing 1.09 N N
29 C5' H5'2 C H sing 1.09 N N
30 O5' PA O P sing 1.61 N N
31 PA O1A P O doub 1.48 N N
32 PA O2A P O sing 1.61 N N
33 PA O3A P O sing 1.61 N N
34 O2A HOA2 O H sing 0.97 N N
35 O3A PB O P sing 1.61 N N
36 PB O1B P O doub 1.48 N N
37 PB O2B P O sing 1.61 N N
38 PB O3B P O sing 1.61 N N
39 O2B HOB2 O H sing 0.97 N N
40 O3B PG O P sing 1.61 N N
41 PG O1G P O doub 1.48 N N
42 PG O2G P O sing 1.61 N N
43 PG O3G P O sing 1.61 N N
44 O2G HOG2 O H sing 0.97 N N
45 O3G HOG3 O H sing 0.97 N N