data_DCP
#
_chem_comp.id DCP
_chem_comp.name "2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H16 N3 O13 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 467.157
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DCP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5KTQ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DCP N1 N1 N 0 1 N N N N N N 43.523 27.326 21.115 0.303 0.627 -5.169 N1 DCP 1
DCP C2 C2 C 0 1 N N N N N N 42.479 27.846 20.303 0.794 -0.618 -5.038 C2 DCP 2
DCP N3 N3 N 0 1 N N N N N N 42.001 27.074 19.283 1.857 -1.015 -5.735 N3 DCP 3
DCP C4 C4 C 0 1 N N N N N N 42.470 25.834 19.073 2.460 -0.189 -6.579 C4 DCP 4
DCP C5 C5 C 0 1 N N N N N N 43.548 25.304 19.872 1.974 1.124 -6.736 C5 DCP 5
DCP C6 C6 C 0 1 N N N N N N 44.025 26.079 20.873 0.889 1.511 -6.025 C6 DCP 6
DCP O2 O2 O 0 1 N N N N N N 41.977 28.958 20.467 0.257 -1.397 -4.267 O2 DCP 7
DCP N4 N4 N 0 1 N N N N N N 41.939 25.080 18.103 3.558 -0.610 -7.293 N4 DCP 8
DCP "C1'" C1* C 0 1 N N R N N N 44.060 28.018 22.332 -0.867 1.034 -4.389 "C1'" DCP 9
DCP "C2'" C2* C 0 1 N N N N N N 44.187 29.561 22.360 -2.064 0.124 -4.725 "C2'" DCP 10
DCP "C3'" C3* C 0 1 N N S N N N 43.939 29.909 23.837 -2.458 -0.501 -3.365 "C3'" DCP 11
DCP "C4'" C4* C 0 1 N N R N N N 43.988 28.529 24.477 -1.837 0.497 -2.356 "C4'" DCP 12
DCP "O4'" O4* O 0 1 N N N N N N 43.365 27.653 23.531 -0.595 0.887 -2.985 "O4'" DCP 13
DCP "O3'" O3* O 0 1 N N N N N N 44.927 30.799 24.404 -3.879 -0.554 -3.221 "O3'" DCP 14
DCP "C5'" C5* C 0 1 N N N N N N 43.336 28.459 25.848 -1.573 -0.187 -1.013 "C5'" DCP 15
DCP "O5'" O5* O 0 1 N N N N N N 43.148 27.105 26.258 -1.000 0.753 -0.103 "O5'" DCP 16
DCP PA PA P 0 1 N N R N N N 44.282 25.926 26.202 -0.750 -0.030 1.280 PA DCP 17
DCP O1A O1A O 0 1 N N N N N N 44.252 25.271 24.864 -2.039 -0.543 1.796 O1A DCP 18
DCP O2A O2A O 0 1 N N N N N N 45.586 26.418 26.729 0.254 -1.262 1.025 O2A DCP 19
DCP O3A O3A O 0 1 N N N N N N 43.606 24.912 27.241 -0.103 0.975 2.358 O3A DCP 20
DCP PB PB P 0 1 N N S N N N 43.713 24.966 28.862 0.118 0.129 3.709 PB DCP 21
DCP O1B O1B O 0 1 N N N N N N 44.267 26.271 29.346 -1.183 -0.386 4.188 O1B DCP 22
DCP O2B O2B O 0 1 N N N N N N 42.423 24.441 29.388 1.109 -1.104 3.413 O2B DCP 23
DCP O3B O3B O 0 1 N N N N N N 44.877 23.842 28.945 0.766 1.079 4.836 O3B DCP 24
DCP PG PG P 0 1 N N N N N N 45.013 22.576 29.922 0.960 0.173 6.153 PG DCP 25
DCP O1G O1G O 0 1 N N N N N N 46.222 22.944 30.715 1.857 -0.961 5.843 O1G DCP 26
DCP O2G O2G O 0 1 N N N N N N 43.755 22.479 30.716 1.608 1.064 7.327 O2G DCP 27
DCP O3G O3G O 0 1 N N N N N N 45.215 21.481 28.941 -0.470 -0.388 6.633 O3G DCP 28
DCP H5 H5 H 0 1 N N N N N N 44.004 24.311 19.718 2.454 1.809 -7.420 H5 DCP 29
DCP H6 H6 H 0 1 N N N N N N 44.839 25.686 21.504 0.494 2.511 -6.131 H6 DCP 30
DCP HN41 1HN4 H 0 0 N N N N N N 42.295 24.137 17.943 3.893 -1.513 -7.180 HN41 DCP 31
DCP HN42 2HN4 H 0 0 N N N N N N 41.987 25.598 17.225 3.995 -0.005 -7.913 HN42 DCP 32
DCP "H1'" H1* H 0 1 N N N N N N 45.104 27.633 22.272 -1.118 2.072 -4.611 "H1'" DCP 33
DCP "H2'1" 1H2* H 0 0 N N N N N N 45.144 29.954 21.945 -2.889 0.711 -5.128 "H2'1" DCP 34
DCP "H2'2" 2H2* H 0 0 N N N N N N 43.522 30.093 21.640 -1.767 -0.652 -5.430 "H2'2" DCP 35
DCP "H3'" H3* H 0 1 N N N N N N 42.988 30.469 23.997 -2.020 -1.493 -3.251 "H3'" DCP 36
DCP "H4'" H4* H 0 1 N N N N N N 45.043 28.236 24.687 -2.486 1.362 -2.223 "H4'" DCP 37
DCP "HO3'" *HO3 H 0 0 N N N N N N 44.773 31.014 25.316 -4.211 -1.118 -3.933 "HO3'" DCP 38
DCP "H5'1" 1H5* H 0 0 N N N N N N 43.909 29.041 26.605 -2.511 -0.562 -0.606 "H5'1" DCP 39
DCP "H5'2" 2H5* H 0 0 N N N N N N 42.381 29.033 25.878 -0.882 -1.018 -1.159 "H5'2" DCP 40
DCP HOA2 2HOA H 0 0 N N N N N N 46.244 25.733 26.696 1.079 -0.885 0.690 HOA2 DCP 41
DCP HOB2 2HOB H 0 0 N N N N N N 42.485 24.472 30.335 1.943 -0.725 3.105 HOB2 DCP 42
DCP HOG2 2HOG H 0 0 N N N N N N 43.835 21.729 31.294 1.706 0.486 8.095 HOG2 DCP 43
DCP HOG3 3HOG H 0 0 N N N N N N 45.295 20.731 29.519 -1.023 0.381 6.824 HOG3 DCP 44
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DCP N1 C2 SING N N 1
DCP N1 C6 SING N N 2
DCP N1 "C1'" SING N N 3
DCP C2 N3 SING N N 4
DCP C2 O2 DOUB N N 5
DCP N3 C4 DOUB N N 6
DCP C4 C5 SING N N 7
DCP C4 N4 SING N N 8
DCP C5 C6 DOUB N N 9
DCP C5 H5 SING N N 10
DCP C6 H6 SING N N 11
DCP N4 HN41 SING N N 12
DCP N4 HN42 SING N N 13
DCP "C1'" "C2'" SING N N 14
DCP "C1'" "O4'" SING N N 15
DCP "C1'" "H1'" SING N N 16
DCP "C2'" "C3'" SING N N 17
DCP "C2'" "H2'1" SING N N 18
DCP "C2'" "H2'2" SING N N 19
DCP "C3'" "C4'" SING N N 20
DCP "C3'" "O3'" SING N N 21
DCP "C3'" "H3'" SING N N 22
DCP "C4'" "O4'" SING N N 23
DCP "C4'" "C5'" SING N N 24
DCP "C4'" "H4'" SING N N 25
DCP "O3'" "HO3'" SING N N 26
DCP "C5'" "O5'" SING N N 27
DCP "C5'" "H5'1" SING N N 28
DCP "C5'" "H5'2" SING N N 29
DCP "O5'" PA SING N N 30
DCP PA O1A DOUB N N 31
DCP PA O2A SING N N 32
DCP PA O3A SING N N 33
DCP O2A HOA2 SING N N 34
DCP O3A PB SING N N 35
DCP PB O1B DOUB N N 36
DCP PB O2B SING N N 37
DCP PB O3B SING N N 38
DCP O2B HOB2 SING N N 39
DCP O3B PG SING N N 40
DCP PG O1G DOUB N N 41
DCP PG O2G SING N N 42
DCP PG O3G SING N N 43
DCP O2G HOG2 SING N N 44
DCP O3G HOG3 SING N N 45
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DCP SMILES ACDLabs 10.04 O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC2OC(N1C(=O)N=C(N)C=C1)CC2O
DCP SMILES_CANONICAL CACTVS 3.341 NC1=NC(=O)N(C=C1)[C@H]2C[C@H](O)[C@@H](CO[P@](O)(=O)O[P@](O)(=O)O[P](O)(O)=O)O2
DCP SMILES CACTVS 3.341 NC1=NC(=O)N(C=C1)[CH]2C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2
DCP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C1[C@@H]([C@H](O[C@H]1N2C=CC(=NC2=O)N)CO[P@@](=O)(O)O[P@@](=O)(O)OP(=O)(O)O)O
DCP SMILES "OpenEye OEToolkits" 1.5.0 C1C(C(OC1N2C=CC(=NC2=O)N)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O
DCP InChI InChI 1.03 InChI=1S/C9H16N3O13P3/c10-7-1-2-12(9(14)11-7)8-3-5(13)6(23-8)4-22-27(18,19)25-28(20,21)24-26(15,16)17/h1-2,5-6,8,13H,3-4H2,(H,18,19)(H,20,21)(H2,10,11,14)(H2,15,16,17)/t5-,6+,8+/m0/s1
DCP InChIKey InChI 1.03 RGWHQCVHVJXOKC-SHYZEUOFSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DCP "SYSTEMATIC NAME" ACDLabs 10.04 "2'-deoxycytidine 5'-(tetrahydrogen triphosphate)"
DCP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methyl (hydroxy-phosphonooxy-phosphoryl) hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DCP 'Create component' 1999-07-08 RCSB
DCP 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id DCP
_pdbe_chem_comp_drugbank_details.drugbank_id DB03258
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name "2'-Deoxycytidine 5'-triphosphate"
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 2056-98-6
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
DCP "2'-Deoxycytidine-5'-Triphosphate" DrugBank ?
DCP dCTP DrugBank ?
DCP "Deoxycytidine 5'-triphosphate" DrugBank ?
DCP 'Deoxycytidine triphosphate' DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id DCP
_pdbe_chem_comp_drugbank_classification.drugbank_id DB03258
_pdbe_chem_comp_drugbank_classification.parent "Pyrimidine 2'-deoxyribonucleoside triphosphates"
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Pyrimidine nucleotides'
_pdbe_chem_comp_drugbank_classification.superclass 'Nucleosides, nucleotides, and analogues'
_pdbe_chem_comp_drugbank_classification.description
"This compound belongs to the class of organic compounds known as pyrimidine 2'-deoxyribonucleoside triphosphates. These are pyrimidine nucleotides with a triphosphate group  linked to the ribose moiety lacking a hydroxyl group at position 2."
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
DCP DB03258 'Anaerobic ribonucleoside-triphosphate reductase' 'Enterobacteria phage T4' P07071 unknown 1
DCP DB03258 'Deoxycytidine triphosphate deaminase' 'Escherichia coli (strain K12)' P28248 unknown 2
DCP DB03258 'DNA polymerase I, thermostable' 'Thermus aquaticus' P19821 unknown 3
DCP DB03258 'Ribonucleoside-diphosphate reductase 2 subunit alpha' 'Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)' Q08698 unknown 4
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
DCP N1 N 5.557 2.220 1
DCP C2 C 6.856 2.970 2
DCP N3 N 6.856 4.470 3
DCP C4 C 5.557 5.220 4
DCP C5 C 4.258 4.470 5
DCP C6 C 4.258 2.970 6
DCP O2 O 8.155 2.220 7
DCP N4 N 5.557 6.720 8
DCP "C1'" C 5.557 0.720 9
DCP "C2'" C 4.343 -0.161 10
DCP "C3'" C 4.807 -1.588 11
DCP "C4'" C 6.307 -1.588 12
DCP "O4'" O 6.770 -0.161 13
DCP "O3'" O 3.925 -2.801 14
DCP "C5'" C 7.188 -2.801 15
DCP "O5'" O 8.680 -2.645 16
DCP PA P 9.562 -3.858 17
DCP O1A O 10.775 -2.977 18
DCP O2A O 8.348 -4.740 19
DCP O3A O 10.444 -5.072 20
DCP PB P 11.935 -4.915 21
DCP O1B O 12.092 -6.407 22
DCP O2B O 11.778 -3.423 23
DCP O3B O 13.427 -4.758 24
DCP PG P 14.309 -5.972 25
DCP O1G O 15.190 -7.185 26
DCP O2G O 15.522 -5.090 27
DCP O3G O 13.095 -6.853 28
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
DCP N1 C2 SINGLE NONE 1
DCP N1 C6 SINGLE NONE 2
DCP "C1'" N1 SINGLE BEGINDASH 3
DCP C2 N3 SINGLE NONE 4
DCP C2 O2 DOUBLE NONE 5
DCP N3 C4 DOUBLE NONE 6
DCP C4 C5 SINGLE NONE 7
DCP C4 N4 SINGLE NONE 8
DCP C5 C6 DOUBLE NONE 9
DCP "C1'" "C2'" SINGLE NONE 10
DCP "C1'" "O4'" SINGLE NONE 11
DCP "C2'" "C3'" SINGLE NONE 12
DCP "C3'" "C4'" SINGLE NONE 13
DCP "C3'" "O3'" SINGLE BEGINWEDGE 14
DCP "C4'" "O4'" SINGLE NONE 15
DCP "C4'" "C5'" SINGLE BEGINDASH 16
DCP "C5'" "O5'" SINGLE NONE 17
DCP "O5'" PA SINGLE NONE 18
DCP PA O1A DOUBLE NONE 19
DCP PA O2A SINGLE BEGINWEDGE 20
DCP PA O3A SINGLE NONE 21
DCP O3A PB SINGLE NONE 22
DCP PB O1B DOUBLE NONE 23
DCP PB O2B SINGLE BEGINDASH 24
DCP PB O3B SINGLE NONE 25
DCP O3B PG SINGLE NONE 26
DCP PG O1G DOUBLE NONE 27
DCP PG O2G SINGLE NONE 28
DCP PG O3G SINGLE NONE 29
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
DCP MurckoScaffold S1 scaffold 'O=c1ncccn1[C@H]1CCCO1' InChI=1S/C8H10N2O2/c11-8-9-4-2-5-10(8)7-3-1-6-12-7/h2,4-5,7H,1,3,6H2/t7-/m1/s1 AKXKPKRAUWTVBW-SSDOTTSWSA-N
DCP deoxyribose F1 fragment 'OCC1OC[CH2]C1O' InChI=1S/C5H10O3/c6-3-5-4(7)1-2-8-5/h4-7H,1-3H2 NSMOSDAEGJTOIQ-UHFFFAOYSA-N
DCP phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
DCP pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
DCP N1 S1 1
DCP C2 S1 1
DCP N3 S1 1
DCP C4 S1 1
DCP C5 S1 1
DCP C6 S1 1
DCP O2 S1 1
DCP "C1'" S1 1
DCP "C2'" S1 1
DCP "C3'" S1 1
DCP "C4'" S1 1
DCP "O4'" S1 1
DCP "C1'" F1 1
DCP "C2'" F1 1
DCP "C3'" F1 1
DCP "O3'" F1 1
DCP "C4'" F1 1
DCP "O4'" F1 1
DCP "C5'" F1 1
DCP "O5'" F1 1
DCP "O5'" F2 1
DCP PA F2 1
DCP O1A F2 1
DCP O2A F2 1
DCP O3A F2 1
DCP O3A F2 2
DCP PB F2 2
DCP O1B F2 2
DCP O2B F2 2
DCP O3B F2 2
DCP O3B F2 3
DCP PG F2 3
DCP O1G F2 3
DCP O2G F2 3
DCP O3G F2 3
DCP C5 F3 1
DCP C4 F3 1
DCP N3 F3 1
DCP C2 F3 1
DCP N1 F3 1
DCP C6 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id DCP
_pdbe_chem_comp_rdkit_properties.exactmw 466.990
_pdbe_chem_comp_rdkit_properties.amw 467.157
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 16
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 16
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 28
_pdbe_chem_comp_rdkit_properties.NumAtoms 44
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 19
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.556
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 178.504
_pdbe_chem_comp_rdkit_properties.tpsa 250.190
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.664
_pdbe_chem_comp_rdkit_properties.CrippenMR 86.544
_pdbe_chem_comp_rdkit_properties.chi0v 15.174
_pdbe_chem_comp_rdkit_properties.chi1v 10.435
_pdbe_chem_comp_rdkit_properties.chi2v 5.666
_pdbe_chem_comp_rdkit_properties.chi3v 5.666
_pdbe_chem_comp_rdkit_properties.chi4v 4.000
_pdbe_chem_comp_rdkit_properties.chi0n 28.491
_pdbe_chem_comp_rdkit_properties.chi1n 13.489
_pdbe_chem_comp_rdkit_properties.chi2n 2.151
_pdbe_chem_comp_rdkit_properties.chi3n 2.151
_pdbe_chem_comp_rdkit_properties.chi4n 1.325
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.990
_pdbe_chem_comp_rdkit_properties.kappa1 9.434
_pdbe_chem_comp_rdkit_properties.kappa2 8.400
_pdbe_chem_comp_rdkit_properties.kappa3 6.811
_pdbe_chem_comp_rdkit_properties.Phi 2.830
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
DCP UniChem DrugBank DB03258
DCP UniChem 'KEGG LIGAND' C00458
DCP UniChem ChEBI 16311
DCP UniChem ZINC ZINC000008215945
DCP UniChem eMolecules 31267425
DCP UniChem SureChEMBL SCHEMBL42135
DCP UniChem HMDB HMDB0000998
DCP UniChem NMRShiftDB 60020864
DCP UniChem BindingDb 50480766
DCP UniChem MetaboLights MTBLC16311
DCP UniChem BRENDA 112275
DCP UniChem BRENDA 125257
DCP UniChem BRENDA 132766
DCP UniChem BRENDA 179
DCP UniChem BRENDA 35072
DCP UniChem BRENDA 38419
DCP UniChem MedChemExpress HY-101400
DCP UniChem 'Probes And Drugs' PD059829
DCP UniChem Nikkaji J247.702E
DCP UniChem 'PubChem TPHARMA' 15479109
DCP UniChem PubChem 65091
DCP UniChem ACTor 102783-51-7
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
DCP N1 -3.911 0.187 0.739 ETKDGv3 1
DCP C2 -3.445 0.568 -0.571 ETKDGv3 2
DCP N3 -4.360 1.174 -1.490 ETKDGv3 3
DCP C4 -5.606 1.368 -1.175 ETKDGv3 4
DCP C5 -6.119 0.958 0.151 ETKDGv3 5
DCP C6 -5.302 0.395 1.046 ETKDGv3 6
DCP O2 -2.252 0.370 -0.921 ETKDGv3 7
DCP N4 -6.486 1.976 -2.121 ETKDGv3 8
DCP "C1'" -3.038 -0.477 1.719 ETKDGv3 9
DCP "C2'" -2.785 -1.933 1.329 ETKDGv3 10
DCP "C3'" -1.284 -2.036 1.241 ETKDGv3 11
DCP "C4'" -0.807 -0.773 1.955 ETKDGv3 12
DCP "O4'" -1.807 0.206 1.813 ETKDGv3 13
DCP "O3'" -0.831 -3.195 1.892 ETKDGv3 14
DCP "C5'" 0.511 -0.240 1.386 ETKDGv3 15
DCP "O5'" 1.537 -1.180 1.609 ETKDGv3 16
DCP PA 2.980 -0.576 0.932 ETKDGv3 17
DCP O1A 3.376 0.697 1.648 ETKDGv3 18
DCP O2A 4.192 -1.737 1.156 ETKDGv3 19
DCP O3A 2.739 -0.268 -0.727 ETKDGv3 20
DCP PB 4.258 0.053 -1.428 ETKDGv3 21
DCP O1B 5.050 -1.234 -1.511 ETKDGv3 22
DCP O2B 3.991 0.632 -2.996 ETKDGv3 23
DCP O3B 5.102 1.213 -0.506 ETKDGv3 24
DCP PG 6.511 1.639 -1.361 ETKDGv3 25
DCP O1G 6.149 2.423 -2.603 ETKDGv3 26
DCP O2G 7.400 0.262 -1.792 ETKDGv3 27
DCP O3G 7.467 2.612 -0.359 ETKDGv3 28
DCP H5 -7.162 1.111 0.398 ETKDGv3 29
DCP H6 -5.700 0.096 2.008 ETKDGv3 30
DCP HN41 -7.491 2.138 -1.886 ETKDGv3 31
DCP HN42 -6.135 2.266 -3.060 ETKDGv3 32
DCP "H1'" -3.513 -0.451 2.726 ETKDGv3 33
DCP "H2'1" -3.191 -2.609 2.114 ETKDGv3 34
DCP "H2'2" -3.254 -2.200 0.356 ETKDGv3 35
DCP "H3'" -0.983 -2.036 0.166 ETKDGv3 36
DCP "H4'" -0.671 -0.979 3.042 ETKDGv3 37
DCP "HO3'" 0.078 -3.382 1.539 ETKDGv3 38
DCP "H5'1" 0.376 -0.040 0.299 ETKDGv3 39
DCP "H5'2" 0.745 0.717 1.905 ETKDGv3 40
DCP HOA2 3.819 -2.567 0.766 ETKDGv3 41
DCP HOB2 3.400 1.418 -2.876 ETKDGv3 42
DCP HOG2 8.181 0.610 -2.291 ETKDGv3 43
DCP HOG3 8.269 2.824 -0.900 ETKDGv3 44
#