Chemical Components in the PDB

pdbe.org/chem
spacer

PDBeChem : Atoms of Molecule

 Molecule : DCP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 44


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 0.303 0.627 -5.169
2 C2 C C2 N N N 0 0.794 -0.618 -5.038
3 N3 N N3 N N N 0 1.857 -1.015 -5.735
4 C4 C C4 N N N 0 2.46 -0.189 -6.579
5 C5 C C5 N N N 0 1.974 1.124 -6.736
6 C6 C C6 N N N 0 0.889 1.511 -6.025
7 O2 O O2 N N N 0 0.257 -1.397 -4.267
8 N4 N N4 N N N 0 3.558 -0.61 -7.293
9 C1' C C1* R N N 0 -0.867 1.034 -4.389
10 C2' C C2* N N N 0 -2.064 0.124 -4.725
11 C3' C C3* S N N 0 -2.458 -0.501 -3.365
12 C4' C C4* R N N 0 -1.837 0.497 -2.356
13 O4' O O4* N N N 0 -0.595 0.887 -2.985
14 O3' O O3* N N N 0 -3.879 -0.554 -3.221
15 C5' C C5* N N N 0 -1.573 -0.187 -1.013
16 O5' O O5* N N N 0 -1.0 0.753 -0.103
17 PA P PA R N N 0 -0.75 -0.03 1.28
18 O1A O O1A N N N 0 -2.039 -0.543 1.796
19 O2A O O2A N N N 0 0.254 -1.262 1.025
20 O3A O O3A N N N 0 -0.103 0.975 2.358
21 PB P PB S N N 0 0.118 0.129 3.709
22 O1B O O1B N N N 0 -1.183 -0.386 4.188
23 O2B O O2B N N N 0 1.109 -1.104 3.413
24 O3B O O3B N N N 0 0.766 1.079 4.836
25 PG P PG N N N 0 0.96 0.173 6.153
26 O1G O O1G N N N 0 1.857 -0.961 5.843
27 O2G O O2G N N N 0 1.608 1.064 7.327
28 O3G O O3G N N N 0 -0.47 -0.388 6.633
29 H5 H H5 N N N 0 2.454 1.809 -7.42
30 H6 H H6 N N N 0 0.494 2.511 -6.131
31 HN41 H 1HN4 N N N 0 3.893 -1.513 -7.18
32 HN42 H 2HN4 N N N 0 3.995 -0.005 -7.913
33 H1' H H1* N N N 0 -1.118 2.072 -4.611
34 H2'1 H 1H2* N N N 0 -2.889 0.711 -5.128
35 H2'2 H 2H2* N N N 0 -1.767 -0.652 -5.43
36 H3' H H3* N N N 0 -2.02 -1.493 -3.251
37 H4' H H4* N N N 0 -2.486 1.362 -2.223
38 H5'2 H 2H5* N N N 0 -0.882 -1.018 -1.159
39 HO3' H *HO3 N N N 0 -4.211 -1.118 -3.933
40 H5'1 H 1H5* N N N 0 -2.511 -0.562 -0.606
41 HOA2 H 2HOA N N N 0 1.079 -0.885 0.69
42 HOB2 H 2HOB N N N 0 1.943 -0.725 3.105
43 HOG2 H 2HOG N N N 0 1.706 0.486 8.095
44 HOG3 H 3HOG N N N 0 -1.023 0.381 6.824