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PDBeChem : Atoms of Molecule
Molecule : DCP
Atoms of a chemical element, that composes a molecule
Total Number of Atoms: 44
| Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
| 1 |
N1 |
N |
N1 |
N |
N |
N |
0 |
0.303 |
0.627 |
-5.169 |
| 2 |
C2 |
C |
C2 |
N |
N |
N |
0 |
0.794 |
-0.618 |
-5.038 |
| 3 |
N3 |
N |
N3 |
N |
N |
N |
0 |
1.857 |
-1.015 |
-5.735 |
| 4 |
C4 |
C |
C4 |
N |
N |
N |
0 |
2.46 |
-0.189 |
-6.579 |
| 5 |
C5 |
C |
C5 |
N |
N |
N |
0 |
1.974 |
1.124 |
-6.736 |
| 6 |
C6 |
C |
C6 |
N |
N |
N |
0 |
0.889 |
1.511 |
-6.025 |
| 7 |
O2 |
O |
O2 |
N |
N |
N |
0 |
0.257 |
-1.397 |
-4.267 |
| 8 |
N4 |
N |
N4 |
N |
N |
N |
0 |
3.558 |
-0.61 |
-7.293 |
| 9 |
C1' |
C |
C1* |
R |
N |
N |
0 |
-0.867 |
1.034 |
-4.389 |
| 10 |
C2' |
C |
C2* |
N |
N |
N |
0 |
-2.064 |
0.124 |
-4.725 |
| 11 |
C3' |
C |
C3* |
S |
N |
N |
0 |
-2.458 |
-0.501 |
-3.365 |
| 12 |
C4' |
C |
C4* |
R |
N |
N |
0 |
-1.837 |
0.497 |
-2.356 |
| 13 |
O4' |
O |
O4* |
N |
N |
N |
0 |
-0.595 |
0.887 |
-2.985 |
| 14 |
O3' |
O |
O3* |
N |
N |
N |
0 |
-3.879 |
-0.554 |
-3.221 |
| 15 |
C5' |
C |
C5* |
N |
N |
N |
0 |
-1.573 |
-0.187 |
-1.013 |
| 16 |
O5' |
O |
O5* |
N |
N |
N |
0 |
-1.0 |
0.753 |
-0.103 |
| 17 |
PA |
P |
PA |
R |
N |
N |
0 |
-0.75 |
-0.03 |
1.28 |
| 18 |
O1A |
O |
O1A |
N |
N |
N |
0 |
-2.039 |
-0.543 |
1.796 |
| 19 |
O2A |
O |
O2A |
N |
N |
N |
0 |
0.254 |
-1.262 |
1.025 |
| 20 |
O3A |
O |
O3A |
N |
N |
N |
0 |
-0.103 |
0.975 |
2.358 |
| 21 |
PB |
P |
PB |
S |
N |
N |
0 |
0.118 |
0.129 |
3.709 |
| 22 |
O1B |
O |
O1B |
N |
N |
N |
0 |
-1.183 |
-0.386 |
4.188 |
| 23 |
O2B |
O |
O2B |
N |
N |
N |
0 |
1.109 |
-1.104 |
3.413 |
| 24 |
O3B |
O |
O3B |
N |
N |
N |
0 |
0.766 |
1.079 |
4.836 |
| 25 |
PG |
P |
PG |
N |
N |
N |
0 |
0.96 |
0.173 |
6.153 |
| 26 |
O1G |
O |
O1G |
N |
N |
N |
0 |
1.857 |
-0.961 |
5.843 |
| 27 |
O2G |
O |
O2G |
N |
N |
N |
0 |
1.608 |
1.064 |
7.327 |
| 28 |
O3G |
O |
O3G |
N |
N |
N |
0 |
-0.47 |
-0.388 |
6.633 |
| 29 |
H5 |
H |
H5 |
N |
N |
N |
0 |
2.454 |
1.809 |
-7.42 |
| 30 |
H6 |
H |
H6 |
N |
N |
N |
0 |
0.494 |
2.511 |
-6.131 |
| 31 |
HN41 |
H |
1HN4 |
N |
N |
N |
0 |
3.893 |
-1.513 |
-7.18 |
| 32 |
HN42 |
H |
2HN4 |
N |
N |
N |
0 |
3.995 |
-0.005 |
-7.913 |
| 33 |
H1' |
H |
H1* |
N |
N |
N |
0 |
-1.118 |
2.072 |
-4.611 |
| 34 |
H2'1 |
H |
1H2* |
N |
N |
N |
0 |
-2.889 |
0.711 |
-5.128 |
| 35 |
H2'2 |
H |
2H2* |
N |
N |
N |
0 |
-1.767 |
-0.652 |
-5.43 |
| 36 |
H3' |
H |
H3* |
N |
N |
N |
0 |
-2.02 |
-1.493 |
-3.251 |
| 37 |
H4' |
H |
H4* |
N |
N |
N |
0 |
-2.486 |
1.362 |
-2.223 |
| 38 |
H5'2 |
H |
2H5* |
N |
N |
N |
0 |
-0.882 |
-1.018 |
-1.159 |
| 39 |
HO3' |
H |
*HO3 |
N |
N |
N |
0 |
-4.211 |
-1.118 |
-3.933 |
| 40 |
H5'1 |
H |
1H5* |
N |
N |
N |
0 |
-2.511 |
-0.562 |
-0.606 |
| 41 |
HOA2 |
H |
2HOA |
N |
N |
N |
0 |
1.079 |
-0.885 |
0.69 |
| 42 |
HOB2 |
H |
2HOB |
N |
N |
N |
0 |
1.943 |
-0.725 |
3.105 |
| 43 |
HOG2 |
H |
2HOG |
N |
N |
N |
0 |
1.706 |
0.486 |
8.095 |
| 44 |
HOG3 |
H |
3HOG |
N |
N |
N |
0 |
-1.023 |
0.381 |
6.824 |
|