Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : CXR    

Bonds between two atoms of the molecule

Total Number of Bonds: 60


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O2B PB O P doub 1.48 N N
2 PB O3A P O sing 1.61 N N
3 PB O1B P O sing 1.61 N N
4 PB O5D P O sing 1.61 N N
5 O3A PA O P sing 1.61 N N
6 O5D C5D O C sing 1.43 N N
7 C5D C4D C C sing 1.53 N N
8 C4D C3D C C sing 1.54 N N
9 C4D O4D C O sing 1.42 N N
10 C3D O3D C O sing 1.43 N N
11 C3D C2D C C sing 1.54 N N
12 C2D O2D C O sing 1.43 N N
13 C2D C1D C C sing 1.54 N N
14 O4D C1D O C sing 1.42 N N
15 C1D N1 C N sing 1.47 N N
16 N1 C6 N C sing 1.39 N N
17 N1 C2 N C sing 1.36 N N
18 C6 N6 C N doub 1.31 N N
19 C6 C5 C C sing 1.47 N N
20 N6 HN6 N H sing 0.97 N N
21 C5 N7 C N sing 1.34 N Y
22 C5 C4 C C doub 1.41 N Y
23 N7 C8 N C doub 1.3 N Y
24 C8 N9 C N sing 1.37 N Y
25 C2 N3 C N doub 1.31 N N
26 N3 C4 N C sing 1.35 N N
27 C4 N9 C N sing 1.36 N Y
28 N9 C1' N C sing 1.46 N N
29 C1' O4' C O sing 1.44 N N
30 C1' C2' C C sing 1.54 N N
31 O4' C4' O C sing 1.43 N N
32 C2' O2' C O sing 1.43 N N
33 C2' C3' C C sing 1.54 N N
34 C3' C4' C C sing 1.54 N N
35 C4' C5' C C sing 1.53 N N
36 C5' O5' C O sing 1.43 N N
37 O5' PA O P sing 1.61 N N
38 PA O2A P O doub 1.48 N N
39 PA O1A P O sing 1.61 N N
40 C3' O3' C O sing 1.43 N N
41 O1B H1B O H sing 0.97 N N
42 C5D H11 C H sing 1.09 N N
43 C5D H12 C H sing 1.09 N N
44 C4D H4' C H sing 1.09 N N
45 C3D H3' C H sing 1.09 N N
46 O3D H2 O H sing 0.97 N N
47 C2D H1 C H sing 1.09 N N
48 O2D H2' O H sing 0.97 N N
49 C1D H1' C H sing 1.09 N N
50 C8 H8 C H sing 1.08 N N
51 C2 H3 C H sing 1.08 N N
52 C1' H4 C H sing 1.09 N N
53 C2' H9 C H sing 1.09 N N
54 O2' H10 O H sing 0.97 N N
55 C3' H6 C H sing 1.09 N N
56 C4' H5 C H sing 1.09 N N
57 C5' H5'1 C H sing 1.09 N N
58 C5' H5'2 C H sing 1.09 N N
59 O1A H1A O H sing 0.97 N N
60 O3' H7 O H sing 0.97 N N