Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : CXR

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 56


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O2B O O2B N N N 0 -1.815 3.973 0.133
2 PB P PB N N N 0 -1.198 2.914 -0.696
3 O3A O O3A N N N 0 0.233 2.516 -0.083
4 O1B O O1B N N N 0 -1.009 3.45 -2.203
5 O5D O O5D N N N 0 -2.149 1.61 -0.701
6 C5D C C5D N N N 0 -3.572 1.697 -0.587
7 C4D C C4D R N N 0 -4.179 0.293 -0.607
8 C3D C C3D S N N 0 -4.196 -0.276 0.824
9 O3D O O3D N N N 0 -5.477 -0.087 1.429
10 C2D C C2D R N N 0 -3.913 -1.774 0.6
11 O2D O O2D N N N 0 -5.135 -2.513 0.569
12 O4D O O4D N N N 0 -3.389 -0.576 -1.41
13 C1D C C1D R N N 0 -3.215 -1.832 -0.77
14 N1 N N1 S N N 0 -1.788 -2.107 -0.562
15 C6 C C6 N N N 0 -1.397 -3.362 -0.105
16 N6 N N6 N N N 0 -2.231 -4.367 0.031
17 C5 C C5 N Y N 0 0.034 -3.46 0.212
18 N7 N N7 N Y N 0 0.789 -4.447 0.706
19 C8 C C8 N Y N 0 2.018 -4.034 0.852
20 C2 C C2 N N N 0 -0.873 -1.14 -0.815
21 N3 N N3 N N N 0 0.408 -1.235 -0.567
22 C4 C C4 N Y N 0 0.887 -2.364 -0.012
23 N9 N N9 N Y N 0 2.107 -2.726 0.456
24 C1' C C1' R N N 0 3.293 -1.883 0.568
25 O4' O O4' N N N 0 2.926 -0.547 0.942
26 C2' C C2' R N N 0 4.017 -1.787 -0.787
27 O2' O O2' N N N 0 5.111 -2.705 -0.84
28 C3' C C3' S N N 0 4.528 -0.333 -0.827
29 C4' C C4' R N N 0 3.847 0.375 0.353
30 C5' C C5' N N N 0 3.114 1.617 -0.156
31 O5' O O5' N N N 0 2.65 2.39 0.949
32 PA P PA N N N 0 1.281 3.238 0.902
33 O2A O O2A N N N 0 0.703 3.317 2.262
34 O1A O O1A N N N 0 1.588 4.723 0.363
35 HN6 H HN6 N N N 0 -1.91 -5.223 0.354
36 O3' O O3' N N N 0 5.948 -0.303 -0.67
37 H1B H H1B N N N 0 -0.444 4.232 -2.274
38 H11 H H11 N N N 0 -3.832 2.19 0.35
39 H12 H H12 N N N 0 -3.968 2.275 -1.422
40 H4' H H4' N N N 0 -5.21 0.333 -0.961
41 H3' H H3' N N N 0 -3.413 0.18 1.431
42 H2 H H2 N N N 0 -5.539 -0.429 2.332
43 H1 H H1 N N N 0 -3.256 -2.158 1.38
44 H3 H H3 N N N 0 -1.228 -0.22 -1.255
45 H2' H H2' N N N 0 -5.644 -2.467 1.39
46 H1' H H1' N N N 0 -3.662 -2.635 -1.362
47 H8 H H8 N N N 0 2.837 -4.63 1.226
48 H4 H H4 N N N 0 3.98 -2.29 1.309
49 H9 H H9 N N N 0 3.323 -1.972 -1.607
50 H10 H H10 N N N 0 5.602 -2.685 -1.673
51 H6 H H6 N N N 0 4.244 0.141 -1.766
52 H5 H H5 N N N 0 4.586 0.677 1.1
53 H5'1 H H5'1 N N N 0 3.795 2.218 -0.759
54 H5'2 H H5'2 N N N 0 2.265 1.311 -0.767
55 H1A H H1A N N N 0 0.808 5.292 0.31
56 H7 H H7 N N N 0 6.43 -0.766 -1.368