data_CXR
#
_chem_comp.id CXR
_chem_comp.name "CYCLIC ADENOSINE DIPHOSPHATE-RIBOSE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H21 N5 O13 P2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "CYCLIC ADP-RIBOSE"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2005-10-05
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 541.300
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code CXR
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2O3S
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CXR O2B O2B O 0 1 N N N N N N 4.779 2.971 3.817 -1.815 3.973 0.133 O2B CXR 1
CXR PB PB P 0 1 N N N N N N 5.523 1.657 3.361 -1.198 2.914 -0.696 PB CXR 2
CXR O3A O3A O 0 1 N N N N N N 5.780 0.737 4.649 0.233 2.516 -0.083 O3A CXR 3
CXR O1B O1B O 0 1 N N N N N N 6.806 1.706 2.546 -1.009 3.450 -2.203 O1B CXR 4
CXR O5D O5D O 0 1 N N N N N N 4.499 0.712 2.554 -2.149 1.610 -0.701 O5D CXR 5
CXR C5D C5D C 0 1 N N N N N N 3.648 1.199 1.488 -3.572 1.697 -0.587 C5D CXR 6
CXR C4D C4D C 0 1 N N R N N N 2.229 0.682 1.678 -4.179 0.293 -0.607 C4D CXR 7
CXR C3D C3D C 0 1 N N S N N N 1.678 0.872 3.092 -4.196 -0.276 0.824 C3D CXR 8
CXR O3D O3D O 0 1 N N N N N N 1.069 2.193 3.311 -5.477 -0.087 1.429 O3D CXR 9
CXR C2D C2D C 0 1 N N R N N N 0.676 -0.229 3.163 -3.913 -1.774 0.600 C2D CXR 10
CXR O2D O2D O 0 1 N N N N N N -0.474 0.185 2.344 -5.135 -2.513 0.569 O2D CXR 11
CXR O4D O4D O 0 1 N N N N N N 2.200 -0.763 1.485 -3.389 -0.576 -1.410 O4D CXR 12
CXR C1D C1D C 0 1 N N R N N N 1.304 -1.377 2.408 -3.215 -1.832 -0.770 C1D CXR 13
CXR N1 N1 N 0 1 N N S N N N 2.142 -2.369 3.176 -1.788 -2.107 -0.562 N1 CXR 14
CXR C6 C6 C 0 1 N N N N N N 1.519 -3.203 4.109 -1.397 -3.362 -0.105 C6 CXR 15
CXR N6 N6 N 0 1 N N N N N N 0.202 -3.416 4.061 -2.231 -4.367 0.031 N6 CXR 16
CXR C5 C5 C 0 1 Y N N N N N 2.373 -3.948 5.042 0.034 -3.460 0.212 C5 CXR 17
CXR N7 N7 N 0 1 Y N N N N N 2.098 -4.884 6.000 0.789 -4.447 0.706 N7 CXR 18
CXR C8 C8 C 0 1 Y N N N N N 3.276 -5.203 6.612 2.018 -4.034 0.852 C8 CXR 19
CXR C2 C2 C 0 1 N N N N N N 3.569 -2.137 3.292 -0.873 -1.140 -0.815 C2 CXR 20
CXR N3 N3 N 0 1 N N N N N N 4.352 -2.806 4.151 0.408 -1.235 -0.567 N3 CXR 21
CXR C4 C4 C 0 1 Y N N N N N 3.792 -3.701 5.063 0.887 -2.364 -0.012 C4 CXR 22
CXR N9 N9 N 0 1 Y N N N N N 4.310 -4.506 6.029 2.107 -2.726 0.456 N9 CXR 23
CXR "C1'" "C1'" C 0 1 N N R N N N 5.722 -4.583 6.472 3.293 -1.883 0.568 "C1'" CXR 24
CXR "O4'" "O4'" O 0 1 N N N N N N 6.064 -3.216 6.895 2.926 -0.547 0.942 "O4'" CXR 25
CXR "C2'" "C2'" C 0 1 N N R N N N 6.686 -4.993 5.406 4.017 -1.787 -0.787 "C2'" CXR 26
CXR "O2'" "O2'" O 0 1 N N N N N N 7.086 -6.311 5.670 5.111 -2.705 -0.840 "O2'" CXR 27
CXR "C3'" "C3'" C 0 1 N N S N N N 7.895 -4.115 5.636 4.528 -0.333 -0.827 "C3'" CXR 28
CXR "C4'" "C4'" C 0 1 N N R N N N 7.383 -2.839 6.338 3.847 0.375 0.353 "C4'" CXR 29
CXR "C5'" "C5'" C 0 1 N N N N N N 7.309 -1.591 5.459 3.114 1.617 -0.156 "C5'" CXR 30
CXR "O5'" "O5'" O 0 1 N N N N N N 7.107 -0.473 6.334 2.650 2.390 0.949 "O5'" CXR 31
CXR PA PA P 0 1 N N N N N N 6.931 1.040 5.798 1.281 3.238 0.902 PA CXR 32
CXR O2A O2A O 0 1 N N N N N N 6.257 1.856 6.932 0.703 3.317 2.262 O2A CXR 33
CXR O1A O1A O 0 1 N N N N N N 8.230 1.526 5.178 1.588 4.723 0.363 O1A CXR 34
CXR HN6 HN6 H 0 1 N N N N N N -0.089 -4.114 4.715 -1.910 -5.223 0.354 HN6 CXR 35
CXR "O3'" "O3'" O 0 1 N N N N N N 8.595 -5.235 6.184 5.948 -0.303 -0.670 "O3'" CXR 36
CXR H1B H1B H 0 1 N N N N N N 7.044 2.611 2.384 -0.444 4.232 -2.274 H1B CXR 37
CXR H11 H11 H 0 1 N N N N N N 3.639 2.299 1.503 -3.832 2.190 0.350 H11 CXR 38
CXR H12 H12 H 0 1 N N N N N N 4.037 0.846 0.522 -3.968 2.275 -1.422 H12 CXR 39
CXR "H4'" "H4'" H 0 1 N N N N N N 1.630 1.254 0.954 -5.210 0.333 -0.961 "H4'" CXR 40
CXR "H3'" "H3'" H 0 1 N N N N N N 2.454 0.835 3.870 -3.413 0.180 1.431 "H3'" CXR 41
CXR H2 H2 H 0 1 N N N N N N 0.747 2.250 4.203 -5.539 -0.429 2.332 H2 CXR 42
CXR H1 H1 H 0 1 N N N N N N 0.389 -0.473 4.197 -3.256 -2.158 1.380 H1 CXR 43
CXR "H2'" "H2'" H 0 1 N N N N N N -1.138 -0.494 2.364 -5.644 -2.467 1.390 "H2'" CXR 44
CXR "H1'" "H1'" H 0 1 N N N N N N 0.461 -1.962 2.012 -3.662 -2.635 -1.362 "H1'" CXR 45
CXR H8 H8 H 0 1 N N N N N N 3.381 -5.899 7.431 2.837 -4.630 1.226 H8 CXR 46
CXR H3 H3 H 0 1 N N N N N N 4.022 -1.390 2.657 -1.228 -0.220 -1.255 H3 CXR 47
CXR H4 H4 H 0 1 N N N N N N 5.804 -5.349 7.257 3.980 -2.290 1.309 H4 CXR 48
CXR H9 H9 H 0 1 N N N N N N 6.263 -4.912 4.394 3.323 -1.972 -1.607 H9 CXR 49
CXR H10 H10 H 0 1 N N N N N N 7.701 -6.595 5.004 5.602 -2.685 -1.673 H10 CXR 50
CXR H6 H6 H 0 1 N N N N N N 8.547 -3.569 4.939 4.244 0.141 -1.766 H6 CXR 51
CXR H5 H5 H 0 1 N N N N N N 8.101 -2.526 7.110 4.586 0.677 1.100 H5 CXR 52
CXR "H5'1" "H5'1" H 0 0 N N N N N N 8.243 -1.468 4.892 3.795 2.218 -0.759 "H5'1" CXR 53
CXR "H5'2" "H5'2" H 0 0 N N N N N N 6.474 -1.674 4.747 2.265 1.311 -0.767 "H5'2" CXR 54
CXR H1A H1A H 0 1 N N N N N N 8.495 2.338 5.593 0.808 5.292 0.310 H1A CXR 55
CXR H7 H7 H 0 1 N N N N N N 9.469 -4.967 6.444 6.430 -0.766 -1.368 H7 CXR 56
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CXR O2B PB DOUB N N 1
CXR PB O3A SING N N 2
CXR PB O1B SING N N 3
CXR PB O5D SING N N 4
CXR O3A PA SING N N 5
CXR O5D C5D SING N N 6
CXR C5D C4D SING N N 7
CXR C4D C3D SING N N 8
CXR C4D O4D SING N N 9
CXR C3D O3D SING N N 10
CXR C3D C2D SING N N 11
CXR C2D O2D SING N N 12
CXR C2D C1D SING N N 13
CXR O4D C1D SING N N 14
CXR C1D N1 SING N N 15
CXR N1 C6 SING N N 16
CXR N1 C2 SING N N 17
CXR C6 N6 DOUB N N 18
CXR C6 C5 SING N N 19
CXR N6 HN6 SING N N 20
CXR C5 N7 SING Y N 21
CXR C5 C4 DOUB Y N 22
CXR N7 C8 DOUB Y N 23
CXR C8 N9 SING Y N 24
CXR C2 N3 DOUB N N 25
CXR N3 C4 SING N N 26
CXR C4 N9 SING Y N 27
CXR N9 "C1'" SING N N 28
CXR "C1'" "O4'" SING N N 29
CXR "C1'" "C2'" SING N N 30
CXR "O4'" "C4'" SING N N 31
CXR "C2'" "O2'" SING N N 32
CXR "C2'" "C3'" SING N N 33
CXR "C3'" "C4'" SING N N 34
CXR "C4'" "C5'" SING N N 35
CXR "C5'" "O5'" SING N N 36
CXR "O5'" PA SING N N 37
CXR PA O2A DOUB N N 38
CXR PA O1A SING N N 39
CXR "C3'" "O3'" SING N N 40
CXR O1B H1B SING N N 41
CXR C5D H11 SING N N 42
CXR C5D H12 SING N N 43
CXR C4D "H4'" SING N N 44
CXR C3D "H3'" SING N N 45
CXR O3D H2 SING N N 46
CXR C2D H1 SING N N 47
CXR O2D "H2'" SING N N 48
CXR C1D "H1'" SING N N 49
CXR C8 H8 SING N N 50
CXR C2 H3 SING N N 51
CXR "C1'" H4 SING N N 52
CXR "C2'" H9 SING N N 53
CXR "O2'" H10 SING N N 54
CXR "C3'" H6 SING N N 55
CXR "C4'" H5 SING N N 56
CXR "C5'" "H5'1" SING N N 57
CXR "C5'" "H5'2" SING N N 58
CXR O1A H1A SING N N 59
CXR "O3'" H7 SING N N 60
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CXR SMILES ACDLabs 12.01 O=P4(OCC5OC(n1c2N=CN(C(=[N@H])c2nc1)C3OC(C(O)C3O)COP(=O)(O)O4)C(O)C5O)O
CXR InChI InChI 1.03 InChI=1S/C15H21N5O13P2/c16-12-7-13-18-4-19(12)14-10(23)8(21)5(31-14)1-29-34(25,26)33-35(27,28)30-2-6-9(22)11(24)15(32-6)20(13)3-17-7/h3-6,8-11,14-16,21-24H,1-2H2,(H,25,26)(H,27,28)/b16-12+/t5-,6-,8-,9-,10-,11-,14-,15-/m1/s1
CXR InChIKey InChI 1.03 BQOHYSXSASDCEA-JDDYZZJWSA-N
CXR SMILES_CANONICAL CACTVS 3.370 O[C@H]1[C@@H](O)[C@H]2O[C@@H]1CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5C(=N)[N@]2C=Nc45
CXR SMILES CACTVS 3.370 O[CH]1[CH](O)[CH]2O[CH]1CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5C(=N)[N]2C=Nc45
CXR SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "[H]/N=C/1\c2c3n(cn2)C4C(C(C(O4)COP(=O)(OP(=O)(OCC5C(C(C(N1C=N3)O5)O)O)O)O)O)O"
CXR SMILES "OpenEye OEToolkits" 1.7.2 c1nc2c3n1C4C(C(C(O4)COP(=O)(OP(=O)(OCC5C(C(C(O5)N(C2=N)C=N3)O)O)O)O)O)O
#
_pdbx_chem_comp_identifier.comp_id CXR
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program ACDLabs
_pdbx_chem_comp_identifier.program_version 12.01
_pdbx_chem_comp_identifier.identifier
"(2R,3R,4S,5R,8S,10R,13R,14S,15R,16R,24E)-24-imino-7,9,11,25,26-pentaoxa-1,17,19,22-tetraaza-8,10-diphosphapentacyclo[18.3.1.1~2,5~.1~13,16~.0~17,21~]hexacosa-18,20,22-triene-3,4,8,10,14,15-hexol 8,10-dioxide (non-preferred name)"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CXR 'Create component' 2005-10-05 RCSB
CXR 'Modify descriptor' 2011-06-04 RCSB
CXR 'Other modification' 2011-11-14 RCSB
CXR 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id CXR
_pdbx_chem_comp_synonyms.name "CYCLIC ADP-RIBOSE"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id CXR
_pdbe_chem_comp_synonyms.name 'CYCLIC ADP-RIBOSE'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
CXR O2B O -4.661 -4.509 1
CXR PB P -3.942 -3.124 2
CXR O3A O -3.716 -0.923 3
CXR O1B O -5.477 -2.707 4
CXR O5D O -1.830 -4.580 5
CXR C5D C 3.808 -4.799 6
CXR C4D C 5.277 -3.424 7
CXR C3D C 6.506 -2.552 8
CXR O3D O 7.965 -2.980 9
CXR C2D C 6.046 -1.127 10
CXR O2D O 6.916 0.119 11
CXR O4D O 4.080 -2.546 12
CXR C1D C 4.541 -1.133 13
CXR N1 N 3.295 -0.684 14
CXR C6 C 1.993 -1.451 15
CXR N6 N 1.946 -2.879 16
CXR C5 C 0.689 -0.700 17
CXR N7 N -0.740 -1.154 18
CXR C8 C -1.616 0.062 19
CXR C2 C 3.285 0.806 20
CXR N3 N 1.987 1.545 21
CXR C4 C 0.691 0.799 22
CXR N9 N -0.724 1.269 23
CXR "C1'" C -0.948 2.680 24
CXR "O4'" O -2.428 2.853 25
CXR "C2'" C -0.312 4.046 26
CXR "O2'" O 1.163 4.329 27
CXR "C3'" C -1.418 5.061 28
CXR "C4'" C -2.728 4.318 29
CXR "C5'" C -4.222 4.260 30
CXR "O5'" O -5.343 2.513 31
CXR PA P -5.538 0.307 32
CXR O2A O -6.280 -1.030 33
CXR O1A O -7.038 0.780 34
CXR HN6 H 0.600 -3.475 35
CXR "O3'" O -1.230 6.554 36
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
CXR O2B PB DOUBLE NONE 1
CXR PB O3A SINGLE NONE 2
CXR PB O1B SINGLE BEGINDASH 3
CXR PB O5D SINGLE NONE 4
CXR O3A PA SINGLE NONE 5
CXR O5D C5D SINGLE NONE 6
CXR C5D C4D SINGLE NONE 7
CXR C4D C3D SINGLE NONE 8
CXR C4D O4D SINGLE NONE 9
CXR C3D O3D SINGLE BEGINDASH 10
CXR C3D C2D SINGLE NONE 11
CXR C2D O2D SINGLE BEGINDASH 12
CXR C2D C1D SINGLE NONE 13
CXR O4D C1D SINGLE NONE 14
CXR C1D N1 SINGLE NONE 15
CXR N1 C6 SINGLE ENDUPRIGHT 16
CXR N1 C2 SINGLE NONE 17
CXR C6 N6 DOUBLE NONE 18
CXR C6 C5 SINGLE ENDUPRIGHT 19
CXR C5 N7 SINGLE NONE 20
CXR C5 C4 DOUBLE NONE 21
CXR N7 C8 DOUBLE NONE 22
CXR C8 N9 SINGLE NONE 23
CXR C2 N3 DOUBLE NONE 24
CXR N3 C4 SINGLE NONE 25
CXR C4 N9 SINGLE NONE 26
CXR N9 "C1'" SINGLE NONE 27
CXR "C1'" "O4'" SINGLE NONE 28
CXR "C1'" "C2'" SINGLE NONE 29
CXR "O4'" "C4'" SINGLE NONE 30
CXR "C2'" "O2'" SINGLE BEGINWEDGE 31
CXR "C2'" "C3'" SINGLE NONE 32
CXR "C3'" "C4'" SINGLE NONE 33
CXR "C4'" "C5'" SINGLE NONE 34
CXR "C5'" "O5'" SINGLE NONE 35
CXR "O5'" PA SINGLE NONE 36
CXR PA O2A DOUBLE NONE 37
CXR PA O1A SINGLE BEGINDASH 38
CXR "C3'" "O3'" SINGLE BEGINWEDGE 39
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
CXR MurckoScaffold S1 scaffold 'N=c1c2ncn3c2ncn1[C@H]1CC[C@@H](CO[PH](=O)O[PH](=O)OC[C@@H]2CC[C@H]3O2)O1' InChI=1S/C15H21N5O7P2/c16-14-13-15-18-8-19(14)11-3-1-9(25-11)5-23-28(21)27-29(22)24-6-10-2-4-12(26-10)20(15)7-17-13/h7-12,16,28-29H,1-6H2/t9-,10-,11+,12+/m0/s1 YQINHOOBXYADIU-NNYUYHANSA-N
CXR imidazole F1 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
CXR phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
CXR purine F3 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
CXR pyrimidine F4 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
CXR ribose F5 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
CXR O2B S1 1
CXR PB S1 1
CXR O3A S1 1
CXR O5D S1 1
CXR C5D S1 1
CXR C4D S1 1
CXR C3D S1 1
CXR C2D S1 1
CXR O4D S1 1
CXR C1D S1 1
CXR N1 S1 1
CXR C6 S1 1
CXR N6 S1 1
CXR C5 S1 1
CXR N7 S1 1
CXR C8 S1 1
CXR C2 S1 1
CXR N3 S1 1
CXR C4 S1 1
CXR N9 S1 1
CXR "C1'" S1 1
CXR "O4'" S1 1
CXR "C2'" S1 1
CXR "C3'" S1 1
CXR "C4'" S1 1
CXR "C5'" S1 1
CXR "O5'" S1 1
CXR PA S1 1
CXR O2A S1 1
CXR C5 F1 1
CXR C4 F1 1
CXR N9 F1 1
CXR C8 F1 1
CXR N7 F1 1
CXR O3A F2 1
CXR PB F2 1
CXR O2B F2 1
CXR O1B F2 1
CXR O5D F2 1
CXR O3A F2 2
CXR PA F2 2
CXR O2A F2 2
CXR "O5'" F2 2
CXR O1A F2 2
CXR N7 F3 1
CXR C8 F3 1
CXR N9 F3 1
CXR C4 F3 1
CXR C5 F3 1
CXR C6 F3 1
CXR N1 F3 1
CXR C2 F3 1
CXR N3 F3 1
CXR C5 F4 1
CXR C6 F4 1
CXR N1 F4 1
CXR C2 F4 1
CXR N3 F4 1
CXR C4 F4 1
CXR C2D F5 1
CXR C3D F5 1
CXR C4D F5 1
CXR O4D F5 1
CXR C1D F5 1
CXR C5D F5 1
CXR O5D F5 1
CXR O3D F5 1
CXR O2D F5 1
CXR "C2'" F5 2
CXR "C3'" F5 2
CXR "C4'" F5 2
CXR "O4'" F5 2
CXR "C1'" F5 2
CXR "C5'" F5 2
CXR "O5'" F5 2
CXR "O3'" F5 2
CXR "O2'" F5 2
#
_pdbe_chem_comp_rdkit_properties.comp_id CXR
_pdbe_chem_comp_rdkit_properties.exactmw 541.061
_pdbe_chem_comp_rdkit_properties.amw 541.303
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 18
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 7
_pdbe_chem_comp_rdkit_properties.NumHBA 18
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 35
_pdbe_chem_comp_rdkit_properties.NumAtoms 56
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 20
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.667
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 6
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 8
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 10
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 224.233
_pdbe_chem_comp_rdkit_properties.tpsa 261.160
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.314
_pdbe_chem_comp_rdkit_properties.CrippenMR 103.762
_pdbe_chem_comp_rdkit_properties.chi0v 17.727
_pdbe_chem_comp_rdkit_properties.chi1v 11.383
_pdbe_chem_comp_rdkit_properties.chi2v 6.312
_pdbe_chem_comp_rdkit_properties.chi3v 6.312
_pdbe_chem_comp_rdkit_properties.chi4v 4.284
_pdbe_chem_comp_rdkit_properties.chi0n 36.938
_pdbe_chem_comp_rdkit_properties.chi1n 18.358
_pdbe_chem_comp_rdkit_properties.chi2n 4.082
_pdbe_chem_comp_rdkit_properties.chi3n 4.082
_pdbe_chem_comp_rdkit_properties.chi4n 2.649
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.630
_pdbe_chem_comp_rdkit_properties.kappa1 10.263
_pdbe_chem_comp_rdkit_properties.kappa2 8.740
_pdbe_chem_comp_rdkit_properties.kappa3 4.400
_pdbe_chem_comp_rdkit_properties.Phi 2.563
#
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
CXR O2B 2.388 -4.202 1.060 ETKDGv3 1
CXR PB 1.481 -3.559 0.033 ETKDGv3 2
CXR O3A -0.140 -3.708 0.537 ETKDGv3 3
CXR O1B 1.655 -4.374 -1.441 ETKDGv3 4
CXR O5D 1.902 -1.917 -0.166 ETKDGv3 5
CXR C5D 3.167 -1.846 -0.784 ETKDGv3 6
CXR C4D 3.663 -0.393 -0.805 ETKDGv3 7
CXR C3D 4.019 0.121 0.593 ETKDGv3 8
CXR O3D 5.345 -0.160 0.978 ETKDGv3 9
CXR C2D 3.717 1.604 0.499 ETKDGv3 10
CXR O2D 4.871 2.376 0.260 ETKDGv3 11
CXR O4D 2.671 0.448 -1.351 ETKDGv3 12
CXR C1D 2.724 1.692 -0.676 ETKDGv3 13
CXR N1 1.373 2.043 -0.205 ETKDGv3 14
CXR C6 0.686 3.239 -0.649 ETKDGv3 15
CXR N6 1.297 4.165 -1.319 ETKDGv3 16
CXR C5 -0.741 3.346 -0.325 ETKDGv3 17
CXR N7 -1.702 4.251 -0.854 ETKDGv3 18
CXR C8 -2.845 3.773 -0.456 ETKDGv3 19
CXR C2 0.635 1.092 0.606 ETKDGv3 20
CXR N3 -0.635 1.251 0.842 ETKDGv3 21
CXR C4 -1.332 2.394 0.343 ETKDGv3 22
CXR N9 -2.737 2.572 0.323 ETKDGv3 23
CXR "C1'" -3.729 1.493 0.315 ETKDGv3 24
CXR "O4'" -3.413 0.538 1.312 ETKDGv3 25
CXR "C2'" -3.766 0.795 -1.059 ETKDGv3 26
CXR "O2'" -5.059 0.832 -1.618 ETKDGv3 27
CXR "C3'" -3.309 -0.617 -0.752 ETKDGv3 28
CXR "C4'" -3.604 -0.735 0.735 ETKDGv3 29
CXR "C5'" -2.731 -1.793 1.424 ETKDGv3 30
CXR "O5'" -1.381 -1.390 1.427 ETKDGv3 31
CXR PA -0.407 -2.709 1.901 ETKDGv3 32
CXR O2A 0.876 -2.169 2.498 ETKDGv3 33
CXR O1A -1.190 -3.620 3.097 ETKDGv3 34
CXR HN6 0.806 5.026 -1.648 ETKDGv3 35
CXR "O3'" -4.014 -1.586 -1.485 ETKDGv3 36
CXR H1B 1.331 -5.292 -1.262 ETKDGv3 37
CXR H11 3.924 -2.464 -0.248 ETKDGv3 38
CXR H12 3.092 -2.198 -1.837 ETKDGv3 39
CXR "H4'" 4.554 -0.342 -1.470 ETKDGv3 40
CXR "H3'" 3.342 -0.330 1.351 ETKDGv3 41
CXR H2 5.954 0.067 0.228 ETKDGv3 42
CXR H1 3.257 1.958 1.448 ETKDGv3 43
CXR "H2'" 5.242 2.116 -0.625 ETKDGv3 44
CXR "H1'" 3.081 2.450 -1.406 ETKDGv3 45
CXR H8 -3.791 4.217 -0.738 ETKDGv3 46
CXR H3 1.125 0.219 1.004 ETKDGv3 47
CXR H4 -4.722 1.933 0.556 ETKDGv3 48
CXR H9 -3.061 1.261 -1.782 ETKDGv3 49
CXR H10 -5.685 0.402 -0.979 ETKDGv3 50
CXR H6 -2.212 -0.705 -0.939 ETKDGv3 51
CXR H5 -4.671 -1.027 0.878 ETKDGv3 52
CXR "H5'1" -3.088 -1.906 2.472 ETKDGv3 53
CXR "H5'2" -2.873 -2.759 0.885 ETKDGv3 54
CXR H1A -1.681 -4.324 2.603 ETKDGv3 55
CXR H7 -3.661 -1.546 -2.412 ETKDGv3 56
#