Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : CL9    

Bonds between two atoms of the molecule

Total Number of Bonds: 33


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C2 CL C CL sing 1.74 N N
2 C2 N3 C N doub 1.32 N Y
3 C2 N1 C N sing 1.32 N Y
4 C4 C5 C C doub 1.4 N Y
5 C4 N3 C N sing 1.33 N Y
6 C4 N9 C N sing 1.37 N Y
7 C5 C6 C C sing 1.4 N Y
8 C5 N7 C N sing 1.36 N Y
9 C6 N6 C N sing 1.38 N N
10 C6 N1 C N doub 1.33 N Y
11 C8 N9 C N sing 1.36 N Y
12 C8 N7 C N doub 1.3 N Y
13 N9 C1' N C sing 1.46 N N
14 C1' C2' C C sing 1.54 N N
15 C1' O4' C O sing 1.44 N N
16 C2' C3' C C sing 1.55 N N
17 C3' O3' C O sing 1.43 N N
18 C3' C4' C C sing 1.55 N N
19 C4' O4' C O sing 1.44 N N
20 C4' C5' C C sing 1.53 N N
21 C5' O5' C O sing 1.43 N N
22 C8 H8 C H sing 1.08 N N
23 N6 HN6 N H sing 0.97 N N
24 N6 HN6A N H sing 0.97 N N
25 C1' H1' C H sing 1.09 N N
26 C2' H2' C H sing 1.09 N N
27 C2' H2'A C H sing 1.09 N N
28 C3' H3' C H sing 1.09 N N
29 O3' HO3' O H sing 0.97 N N
30 C4' H4' C H sing 1.09 N N
31 C5' H5' C H sing 1.09 N N
32 C5' H5'A C H sing 1.09 N N
33 O5' HO5' O H sing 0.97 N N