data_CL9
#
_chem_comp.id CL9
_chem_comp.name "2-chloro-2'-deoxyadenosine"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H12 Cl N5 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-02-18
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 285.687
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code CL9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2ZI9
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CL9 C2 C2 C 0 1 Y N N N N N 51.624 67.584 101.436 -3.138 -0.818 0.242 C2 CL9 1
CL9 C4 C4 C 0 1 Y N N N N N 51.201 65.643 100.381 -1.101 0.238 0.092 C4 CL9 2
CL9 C5 C5 C 0 1 Y N N N N N 49.876 65.729 100.776 -1.759 1.437 -0.227 C5 CL9 3
CL9 C6 C6 C 0 1 Y N N N N N 49.441 66.791 101.516 -3.162 1.426 -0.301 C6 CL9 4
CL9 C8 C8 C 0 1 Y N N N N N 50.162 63.940 99.638 0.369 1.853 -0.211 C8 CL9 5
CL9 CL CL CL 0 0 N N N N N N 52.794 68.844 101.833 -4.034 -2.274 0.545 CL CL9 6
CL9 N3 N3 N 0 1 Y N N N N N 52.079 66.577 100.710 -1.824 -0.855 0.316 N3 CL9 7
CL9 N9 N9 N 0 1 Y N N N N N 51.355 64.535 99.705 0.239 0.530 0.095 N9 CL9 8
CL9 N7 N7 N 0 1 Y N N N N N 49.242 64.667 100.310 -0.804 2.382 -0.405 N7 CL9 9
CL9 N6 N6 N 0 1 N N N N N N 48.158 66.881 101.909 -3.865 2.577 -0.611 N6 CL9 10
CL9 N1 N1 N 0 1 Y N N N N N 50.341 67.726 101.841 -3.800 0.285 -0.060 N1 CL9 11
CL9 "C1'" C1* C 0 1 N N R N N N 52.587 64.084 99.058 1.330 -0.406 0.376 "C1'" CL9 12
CL9 "C2'" C2* C 0 1 N N N N N N 53.552 63.380 99.959 1.712 -1.166 -0.909 "C2'" CL9 13
CL9 "C3'" C3* C 0 1 N N S N N N 54.223 62.449 98.979 3.211 -0.836 -1.114 "C3'" CL9 14
CL9 "O3'" O3* O 0 1 N N N N N N 55.295 63.191 98.392 3.935 -1.993 -1.537 "O3'" CL9 15
CL9 "C4'" C4* C 0 1 N N R N N N 53.206 62.191 97.888 3.645 -0.401 0.309 "C4'" CL9 16
CL9 "O4'" O4* O 0 1 N N N N N N 52.177 63.114 98.111 2.495 0.317 0.808 "O4'" CL9 17
CL9 "C5'" C5* C 0 1 N N N N N N 52.506 60.867 97.958 4.866 0.518 0.243 "C5'" CL9 18
CL9 "O5'" O5* O 0 1 N N N N N N 51.292 61.197 98.602 5.316 0.809 1.567 "O5'" CL9 19
CL9 H8 H8 H 0 1 N N N N N N 49.961 63.013 99.122 1.308 2.382 -0.285 H8 CL9 20
CL9 HN6 HN6 H 0 1 N N N N N N 48.116 66.903 102.908 -3.388 3.405 -0.780 HN6 CL9 21
CL9 HN6A HN6A H 0 0 N N N N N N 47.754 67.718 101.540 -4.833 2.557 -0.658 HN6A CL9 22
CL9 "H1'" H1* H 0 1 N N N N N N 53.098 64.974 98.663 1.023 -1.113 1.147 "H1'" CL9 23
CL9 "H2'" H2* H 0 1 N N N N N N 54.262 64.071 100.437 1.573 -2.239 -0.774 "H2'" CL9 24
CL9 "H2'A" H2*A H 0 0 N N N N N N 53.084 62.874 100.817 1.124 -0.808 -1.754 "H2'A" CL9 25
CL9 "H3'" H3* H 0 1 N N N N N N 54.577 61.517 99.444 3.336 -0.019 -1.826 "H3'" CL9 26
CL9 "HO3'" HO3* H 0 0 N N N N N N 55.103 63.356 97.476 3.637 -2.356 -2.382 "HO3'" CL9 27
CL9 "H4'" H4* H 0 1 N N N N N N 53.751 62.246 96.934 3.852 -1.273 0.930 "H4'" CL9 28
CL9 "H5'" H5* H 0 1 N N N N N N 52.337 60.440 96.959 5.664 0.023 -0.311 "H5'" CL9 29
CL9 "H5'A" H5*A H 0 0 N N N N N N 53.085 60.096 98.487 4.596 1.446 -0.262 "H5'A" CL9 30
CL9 "HO5'" HO5* H 0 0 N N N N N N 51.439 61.271 99.538 6.089 1.389 1.602 "HO5'" CL9 31
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CL9 C2 CL SING N N 1
CL9 C2 N3 DOUB Y N 2
CL9 C2 N1 SING Y N 3
CL9 C4 C5 DOUB Y N 4
CL9 C4 N3 SING Y N 5
CL9 C4 N9 SING Y N 6
CL9 C5 C6 SING Y N 7
CL9 C5 N7 SING Y N 8
CL9 C6 N6 SING N N 9
CL9 C6 N1 DOUB Y N 10
CL9 C8 N9 SING Y N 11
CL9 C8 N7 DOUB Y N 12
CL9 N9 "C1'" SING N N 13
CL9 "C1'" "C2'" SING N N 14
CL9 "C1'" "O4'" SING N N 15
CL9 "C2'" "C3'" SING N N 16
CL9 "C3'" "O3'" SING N N 17
CL9 "C3'" "C4'" SING N N 18
CL9 "C4'" "O4'" SING N N 19
CL9 "C4'" "C5'" SING N N 20
CL9 "C5'" "O5'" SING N N 21
CL9 C8 H8 SING N N 22
CL9 N6 HN6 SING N N 23
CL9 N6 HN6A SING N N 24
CL9 "C1'" "H1'" SING N N 25
CL9 "C2'" "H2'" SING N N 26
CL9 "C2'" "H2'A" SING N N 27
CL9 "C3'" "H3'" SING N N 28
CL9 "O3'" "HO3'" SING N N 29
CL9 "C4'" "H4'" SING N N 30
CL9 "C5'" "H5'" SING N N 31
CL9 "C5'" "H5'A" SING N N 32
CL9 "O5'" "HO5'" SING N N 33
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CL9 SMILES ACDLabs 10.04 Clc1nc(c2ncn(c2n1)C3OC(C(O)C3)CO)N
CL9 SMILES_CANONICAL CACTVS 3.341 Nc1nc(Cl)nc2n(cnc12)[C@H]3C[C@H](O)[C@@H](CO)O3
CL9 SMILES CACTVS 3.341 Nc1nc(Cl)nc2n(cnc12)[CH]3C[CH](O)[CH](CO)O3
CL9 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1nc2c(nc(nc2n1[C@H]3C[C@@H]([C@H](O3)CO)O)Cl)N
CL9 SMILES "OpenEye OEToolkits" 1.5.0 c1nc2c(nc(nc2n1C3CC(C(O3)CO)O)Cl)N
CL9 InChI InChI 1.03 InChI=1S/C10H12ClN5O3/c11-10-14-8(12)7-9(15-10)16(3-13-7)6-1-4(18)5(2-17)19-6/h3-6,17-18H,1-2H2,(H2,12,14,15)/t4-,5+,6+/m0/s1
CL9 InChIKey InChI 1.03 PTOAARAWEBMLNO-KVQBGUIXSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CL9 "SYSTEMATIC NAME" ACDLabs 10.04 "2-chloro-2'-deoxyadenosine"
CL9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2R,3S,5R)-5-(6-amino-2-chloro-purin-9-yl)-2-(hydroxymethyl)oxolan-3-ol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CL9 'Create component' 2008-02-18 PDBJ
CL9 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id CL9
_pdbe_chem_comp_drugbank_details.drugbank_id DB00242
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Cladribine
_pdbe_chem_comp_drugbank_details.description
'Cladribine is a purine analogue or a chlorinated derivative of adenine [A263733] that causes apoptosis of B and T lymphocytes.[A350] Cladribine was first approved in the United States in 1993 [A263713] initially as a treatment for a number of hematological malignancies; currently, it is approved for the treatment of hairy cell leukemia.[A263733] In 2017 in Europe and in 2019 in the United States, cladribine was also approved for the treatment multiple sclerosis.[A263718]'
_pdbe_chem_comp_drugbank_details.cas_number 4291-63-8
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'Heightened activity of B and T lymphocytes have been implicated in the pathophysiology of hematological malignancies and MS.[A350, A263723, A263728] Cladribine is a purine nucleoside analog that closely resembles the molecular structure of deoxyadenosine.[A350] Upon uptake by dividing and nondividing lymphocytes via nucleoside transporter proteins,[A263728] cladribine is converted intracellularly to cladribine triphosphate (Cd-ATP, 2-chlorodeoxyadenosine triphosphate) by deoxycytidine kinase and mitochondrial deoxyguanosine kinase.[A263723, L50688] Because are high levels of deoxycytidine kinase and low levels of 5′-nucleotidase, an enzyme that inactivates Cd-ATP, in lymphocytes, Cd-ATP readily accumulates.[A350, A263723] Cd-ATP competes with adenine triphosphate in DNA synthesis, leading to DNA strand breaks.[A263713] Ultimately, cladribine causes apoptosis or autophagy in dividing and resting lymphocytes.[A263723, A263728]   Cladribine can also induce cytotoxicity via other mechanisms. It induces poly(ADP-ribose) polymerase (PARP), a DNA repair enzyme, that exhausts the intracellular levels of nicotinamide adenine dinucleotide (NAD) and adenosine triphosphate (ATP), thereby causing apoptotic cell death.[A350] Recent evidence shows that cladribine can trigger apoptosis by changing the mitochondrial transmembrane potential, allowing cytochrome c and apoptosis-inducing factor to move into the cytosol. This initiates apoptosis through both caspase-dependent and caspase-independent pathways.[A350]'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
CL9 (2R,3S,5R)-5-(6-amino-2-chloropurin-9-yl)-2-(hydroxymethyl)oxolan-3-ol DrugBank ?
CL9 2-CdA DrugBank ?
CL9 "2-Chloro-2'-deoxy-beta-adenosine" DrugBank ?
CL9 "2-Chloro-2'-deoxyadenosine" DrugBank ?
CL9 '2-chloro-2′-deoxy-adenosine' DrugBank ?
CL9 '2-chloro-6-amino-9-(2-deoxy-β-D-erythro-pentofuranosyl)purine' DrugBank ?
CL9 2-chloro-deoxyadenosine DrugBank ?
CL9 2-Chlorodeoxyadenosine DrugBank ?
CL9 2CDA DrugBank ?
CL9 2ClAdo DrugBank ?
CL9 Cladribine DrugBank ?
CL9 Cladribinum DrugBank ?
CL9 CldAdo DrugBank ?
CL9 Litak DrugBank 'International brand'
CL9 Movectro DrugBank 'International brand'
CL9 Mylinax DrugBank 'International brand'
#
_pdbe_chem_comp_drugbank_classification.comp_id CL9
_pdbe_chem_comp_drugbank_classification.drugbank_id DB00242
_pdbe_chem_comp_drugbank_classification.parent "Purine 2'-deoxyribonucleosides"
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Purine nucleosides'
_pdbe_chem_comp_drugbank_classification.superclass 'Nucleosides, nucleotides, and analogues'
_pdbe_chem_comp_drugbank_classification.description
"This compound belongs to the class of organic compounds known as purine 2'-deoxyribonucleosides. These are compounds consisting of a purine linked to a ribose which lacks a hydroxyl group at position 2."
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
CL9 DB00242 'Ribonucleoside-diphosphate reductase large subunit' Humans P23921 yes 1
CL9 DB00242 'Ribonucleoside-diphosphate reductase subunit M2' Humans P31350 yes 2
CL9 DB00242 'Ribonucleoside-diphosphate reductase subunit M2 B' Humans Q7LG56 yes 3
CL9 DB00242 'DNA polymerase alpha catalytic subunit' Humans P09884 yes 4
CL9 DB00242 'DNA polymerase epsilon catalytic subunit A' Humans Q07864 yes 5
CL9 DB00242 'DNA polymerase epsilon subunit 2' Humans P56282 yes 6
CL9 DB00242 'DNA polymerase epsilon subunit 3' Humans Q9NRF9 yes 7
CL9 DB00242 'DNA polymerase epsilon subunit 4' Humans Q9NR33 yes 8
CL9 DB00242 'Purine nucleoside phosphorylase' Humans P00491 yes 9
CL9 DB00242 'Adenosine deaminase' Humans P00813 unknown 10
CL9 DB00242 'Poly [ADP-ribose] polymerase 1' Humans P09874 unknown 11
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
CL9 C2 C 4.299 -1.760 1
CL9 C4 C 6.897 -1.760 2
CL9 C5 C 6.897 -3.260 3
CL9 C6 C 5.598 -4.010 4
CL9 C8 C 9.192 -2.510 5
CL9 CL Cl 3.000 -1.010 6
CL9 N3 N 5.598 -1.010 7
CL9 N9 N 8.316 -1.303 8
CL9 N7 N 8.316 -3.717 9
CL9 N6 N 5.598 -5.510 10
CL9 N1 N 4.299 -3.260 11
CL9 "C1'" C 8.783 0.123 12
CL9 "C2'" C 10.210 0.584 13
CL9 "C3'" C 10.213 2.084 14
CL9 "O3'" O 11.428 2.963 15
CL9 "C4'" C 8.787 2.550 16
CL9 "O4'" O 7.903 1.338 17
CL9 "C5'" C 8.326 3.977 18
CL9 "O5'" O 9.331 5.090 19
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
CL9 C2 CL SINGLE NONE 1
CL9 C2 N3 DOUBLE NONE 2
CL9 C2 N1 SINGLE NONE 3
CL9 C4 C5 DOUBLE NONE 4
CL9 C4 N3 SINGLE NONE 5
CL9 C4 N9 SINGLE NONE 6
CL9 C5 C6 SINGLE NONE 7
CL9 C5 N7 SINGLE NONE 8
CL9 C6 N6 SINGLE NONE 9
CL9 C6 N1 DOUBLE NONE 10
CL9 C8 N9 SINGLE NONE 11
CL9 C8 N7 DOUBLE NONE 12
CL9 "C1'" N9 SINGLE BEGINDASH 13
CL9 "C1'" "C2'" SINGLE NONE 14
CL9 "C1'" "O4'" SINGLE NONE 15
CL9 "C2'" "C3'" SINGLE NONE 16
CL9 "C3'" "O3'" SINGLE BEGINWEDGE 17
CL9 "C3'" "C4'" SINGLE NONE 18
CL9 "C4'" "O4'" SINGLE NONE 19
CL9 "C4'" "C5'" SINGLE BEGINDASH 20
CL9 "C5'" "O5'" SINGLE NONE 21
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
CL9 MurckoScaffold S1 scaffold 'c1ncc2ncn([C@H]3CCCO3)c2n1' InChI=1S/C9H10N4O/c1-2-8(14-3-1)13-6-12-7-4-10-5-11-9(7)13/h4-6,8H,1-3H2/t8-/m1/s1 DAKONNSVCLKUJN-MRVPVSSYSA-N
CL9 adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
CL9 deoxyribose F2 fragment 'OCC1OC[CH2]C1O' InChI=1S/C5H10O3/c6-3-5-4(7)1-2-8-5/h4-7H,1-3H2 NSMOSDAEGJTOIQ-UHFFFAOYSA-N
CL9 imidazole F3 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
CL9 purine F4 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
CL9 pyrimidine F5 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
CL9 C2 S1 1
CL9 C4 S1 1
CL9 C5 S1 1
CL9 C6 S1 1
CL9 C8 S1 1
CL9 N3 S1 1
CL9 N9 S1 1
CL9 N7 S1 1
CL9 N1 S1 1
CL9 "C1'" S1 1
CL9 "C2'" S1 1
CL9 "C3'" S1 1
CL9 "C4'" S1 1
CL9 "O4'" S1 1
CL9 N1 F1 1
CL9 C6 F1 1
CL9 C5 F1 1
CL9 C4 F1 1
CL9 N3 F1 1
CL9 C2 F1 1
CL9 N9 F1 1
CL9 C8 F1 1
CL9 N7 F1 1
CL9 N6 F1 1
CL9 "C1'" F2 1
CL9 "C2'" F2 1
CL9 "C3'" F2 1
CL9 "O3'" F2 1
CL9 "C4'" F2 1
CL9 "O4'" F2 1
CL9 "C5'" F2 1
CL9 "O5'" F2 1
CL9 C4 F3 1
CL9 C5 F3 1
CL9 N7 F3 1
CL9 C8 F3 1
CL9 N9 F3 1
CL9 N7 F4 1
CL9 C8 F4 1
CL9 N9 F4 1
CL9 C4 F4 1
CL9 C5 F4 1
CL9 C6 F4 1
CL9 N1 F4 1
CL9 C2 F4 1
CL9 N3 F4 1
CL9 C5 F5 1
CL9 C4 F5 1
CL9 N3 F5 1
CL9 C2 F5 1
CL9 N1 F5 1
CL9 C6 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id CL9
_pdbe_chem_comp_rdkit_properties.exactmw 285.063
_pdbe_chem_comp_rdkit_properties.amw 285.691
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 19
_pdbe_chem_comp_rdkit_properties.NumAtoms 31
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 129.504
_pdbe_chem_comp_rdkit_properties.tpsa 119.310
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.106
_pdbe_chem_comp_rdkit_properties.CrippenMR 63.335
_pdbe_chem_comp_rdkit_properties.chi0v 9.595
_pdbe_chem_comp_rdkit_properties.chi1v 5.120
_pdbe_chem_comp_rdkit_properties.chi2v 2.384
_pdbe_chem_comp_rdkit_properties.chi3v 2.384
_pdbe_chem_comp_rdkit_properties.chi4v 1.602
_pdbe_chem_comp_rdkit_properties.chi0n 20.839
_pdbe_chem_comp_rdkit_properties.chi1n 10.452
_pdbe_chem_comp_rdkit_properties.chi2n 2.215
_pdbe_chem_comp_rdkit_properties.chi3n 2.215
_pdbe_chem_comp_rdkit_properties.chi4n 1.442
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.480
_pdbe_chem_comp_rdkit_properties.kappa1 4.813
_pdbe_chem_comp_rdkit_properties.kappa2 4.566
_pdbe_chem_comp_rdkit_properties.kappa3 2.020
_pdbe_chem_comp_rdkit_properties.Phi 1.157
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
CL9 UniChem DrugBank DB00242
CL9 UniChem 'Guide to Pharmacology' 4799
CL9 UniChem 'PubChem DOTF' 99431527
CL9 UniChem ChEBI 567361
CL9 UniChem NIH SAM001246526
CL9 UniChem ZINC ZINC000003798064
CL9 UniChem eMolecules 29542740
CL9 UniChem fdasrs 47M74X9YT5
CL9 UniChem PharmGKB PA449027
CL9 UniChem HMDB HMDB0014387
CL9 UniChem Selleck Cladribine
CL9 UniChem 'PubChem TPHARMA' 14799875
CL9 UniChem LINCS LSM-5976
CL9 UniChem ACTor 24757-90-2
CL9 UniChem ACTor 4291-63-8
CL9 UniChem Nikkaji J446.344G
CL9 UniChem BindingDb 38920
CL9 UniChem DrugCentral 667
CL9 UniChem BRENDA 143941
CL9 UniChem BRENDA 2913
CL9 UniChem BRENDA 5796
CL9 UniChem BRENDA 8475
CL9 UniChem DailyMed CLADRIBINE
CL9 UniChem ClinicalTrials CLADRIBINE
CL9 UniChem ClinicalTrials LEUSTATIN
CL9 UniChem ClinicalTrials LITAK
CL9 UniChem ClinicalTrials RWJ-26251
CL9 UniChem rxnorm CLADRIBINE
CL9 UniChem rxnorm MAVENCLAD
CL9 UniChem MedChemExpress HY-13599
CL9 UniChem 'Probes And Drugs' PD003181
CL9 UniChem CCDC IFOSAY
CL9 UniChem 'EPA CompTox Dashboard' DTXSID8022828
CL9 UniChem SureChEMBL SCHEMBL3775
CL9 UniChem 'PubChem TPHARMA' 14897807
CL9 UniChem PubChem 20279
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
CL9 C2 1.782 -0.161 2.321 ETKDGv3 1
CL9 C4 1.475 0.453 0.067 ETKDGv3 2
CL9 C5 2.700 0.140 -0.254 ETKDGv3 3
CL9 C6 3.609 -0.381 0.775 ETKDGv3 4
CL9 C8 1.713 0.545 -2.121 ETKDGv3 5
CL9 CL 1.200 -0.369 3.958 ETKDGv3 6
CL9 N3 0.973 0.289 1.399 ETKDGv3 7
CL9 N9 0.731 0.764 -1.098 ETKDGv3 8
CL9 N7 2.879 0.186 -1.665 ETKDGv3 9
CL9 N6 4.953 -0.747 0.464 ETKDGv3 10
CL9 N1 3.150 -0.510 1.992 ETKDGv3 11
CL9 "C1'" -0.717 0.676 -1.271 ETKDGv3 12
CL9 "C2'" -1.168 -0.769 -1.379 ETKDGv3 13
CL9 "C3'" -2.556 -0.729 -0.796 ETKDGv3 14
CL9 "O3'" -3.533 -0.620 -1.805 ETKDGv3 15
CL9 "C4'" -2.533 0.519 0.102 ETKDGv3 16
CL9 "O4'" -1.374 1.278 -0.180 ETKDGv3 17
CL9 "C5'" -2.541 0.140 1.590 ETKDGv3 18
CL9 "O5'" -2.454 1.288 2.391 ETKDGv3 19
CL9 H8 1.503 0.638 -3.178 ETKDGv3 20
CL9 HN6 5.584 -1.120 1.208 ETKDGv3 21
CL9 HN6A 5.321 -0.645 -0.507 ETKDGv3 22
CL9 "H1'" -1.002 1.223 -2.198 ETKDGv3 23
CL9 "H2'" -1.157 -1.128 -2.432 ETKDGv3 24
CL9 "H2'A" -0.524 -1.430 -0.756 ETKDGv3 25
CL9 "H3'" -2.754 -1.661 -0.222 ETKDGv3 26
CL9 "HO3'" -3.348 0.203 -2.330 ETKDGv3 27
CL9 "H4'" -3.427 1.150 -0.097 ETKDGv3 28
CL9 "H5'" -1.671 -0.514 1.815 ETKDGv3 29
CL9 "H5'A" -3.466 -0.429 1.836 ETKDGv3 30
CL9 "HO5'" -3.348 1.718 2.368 ETKDGv3 31
#