Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : CL9

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 31


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C2 C C2 N Y N 0 -3.138 -0.818 0.242
2 C4 C C4 N Y N 0 -1.101 0.238 0.092
3 C5 C C5 N Y N 0 -1.759 1.437 -0.227
4 C6 C C6 N Y N 0 -3.162 1.426 -0.301
5 C8 C C8 N Y N 0 0.369 1.853 -0.211
6 CL CL CL N N N 0 -4.034 -2.274 0.545
7 N3 N N3 N Y N 0 -1.824 -0.855 0.316
8 N9 N N9 N Y N 0 0.239 0.53 0.095
9 N7 N N7 N Y N 0 -0.804 2.382 -0.405
10 N6 N N6 N N N 0 -3.865 2.577 -0.611
11 N1 N N1 N Y N 0 -3.8 0.285 -0.06
12 C1' C C1* R N N 0 1.33 -0.406 0.376
13 C2' C C2* N N N 0 1.712 -1.166 -0.909
14 C3' C C3* S N N 0 3.211 -0.836 -1.114
15 O3' O O3* N N N 0 3.935 -1.993 -1.537
16 C4' C C4* R N N 0 3.645 -0.401 0.309
17 O4' O O4* N N N 0 2.495 0.317 0.808
18 C5' C C5* N N N 0 4.866 0.518 0.243
19 O5' O O5* N N N 0 5.316 0.809 1.567
20 H8 H H8 N N N 0 1.308 2.382 -0.285
21 HN6 H HN6 N N N 0 -3.388 3.405 -0.78
22 HN6A H HN6A N N N 0 -4.833 2.557 -0.658
23 H1' H H1* N N N 0 1.023 -1.113 1.147
24 H2' H H2* N N N 0 1.573 -2.239 -0.774
25 H2'A H H2*A N N N 0 1.124 -0.808 -1.754
26 H3' H H3* N N N 0 3.336 -0.019 -1.826
27 HO3' H HO3* N N N 0 3.637 -2.356 -2.382
28 H4' H H4* N N N 0 3.852 -1.273 0.93
29 H5' H H5* N N N 0 5.664 0.023 -0.311
30 H5'A H H5*A N N N 0 4.596 1.446 -0.262
31 HO5' H HO5* N N N 0 6.089 1.389 1.602