Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : BAP    

Bonds between two atoms of the molecule

Total Number of Bonds: 43


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C2 C C doub 1.38 N Y
2 C1 C1A C C sing 1.4 N Y
3 C1 H1 C H sing 1.08 N N
4 C2 C3 C C sing 1.38 N Y
5 C2 H2 C H sing 1.08 N N
6 C3 C3A C C doub 1.4 N Y
7 C3 H3 C H sing 1.08 N N
8 C3A C4 C C sing 1.42 N Y
9 C3A C3B C C sing 1.41 N Y
10 C4 C5 C C doub 1.35 N Y
11 C4 H4 C H sing 1.08 N N
12 C5 C5A C C sing 1.42 N Y
13 C5 H5 C H sing 1.08 N N
14 C5A C6 C C doub 1.4 N Y
15 C5A C5B C C sing 1.41 N Y
16 C6 C7 C C sing 1.38 N Y
17 C6 C4' C C sing 1.51 N N
18 C7 C8 C C doub 1.39 N Y
19 C7 C1' C C sing 1.51 N N
20 C8 C8A C C sing 1.39 N Y
21 C8 H8 C H sing 1.08 N N
22 C8A C9 C C doub 1.42 N Y
23 C8A C5B C C sing 1.41 N Y
24 C9 C10 C C sing 1.35 N Y
25 C9 H9 C H sing 1.08 N N
26 C10 C1A C C doub 1.42 N Y
27 C10 H10 C H sing 1.08 N N
28 C1A C3B C C sing 1.41 N Y
29 C3B C5B C C doub 1.41 N Y
30 C1' O1' C O sing 1.43 N N
31 C1' C2' C C sing 1.53 N N
32 C1' H1' C H sing 1.09 N N
33 O1' HO1 O H sing 0.97 N N
34 C2' O2' C O sing 1.43 N N
35 C2' C3' C C sing 1.53 N N
36 C2' H2' C H sing 1.09 N N
37 O2' HO2 O H sing 0.97 N N
38 C3' O3' C O sing 1.43 N N
39 C3' C4' C C sing 1.53 N N
40 C3' H3' C H sing 1.09 N N
41 O3' HO3 O H sing 0.97 N N
42 C4' H4'1 C H sing 1.09 N N
43 C4' H4'2 C H sing 1.09 N N