Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : BAP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 39


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 -0.794 0.103 -4.781
2 C2 C C2 N Y N 0 0.5 -0.038 -5.242
3 C3 C C3 N Y N 0 1.567 -0.166 -4.373
4 C3A C C3A N Y N 0 1.352 -0.156 -2.993
5 C4 C C4 N Y N 0 2.418 -0.285 -2.07
6 C5 C C5 N Y N 0 2.188 -0.274 -0.737
7 C5A C C5A N Y N 0 0.874 -0.132 -0.228
8 C6 C C6 N Y N 0 0.625 -0.124 1.153
9 C7 C C7 N Y N 0 -0.663 0.018 1.618
10 C8 C C8 N Y N 0 -1.73 0.148 0.736
11 C8A C C8A N Y N 0 -1.524 0.141 -0.641
12 C9 C C9 N Y N 0 -2.592 0.272 -1.562
13 C10 C C10 N Y N 0 -2.364 0.261 -2.896
14 C1A C C1A N Y N 0 -1.052 0.119 -3.408
15 C3B C C3B N Y N 0 0.031 -0.012 -2.511
16 C5B C C5B N Y N 0 -0.205 -0.001 -1.126
17 C1' C C1' R N N 0 -0.989 0.05 3.09
18 O1' O O1' N N N 0 -2.17 -0.719 3.328
19 C2' C C2' R N N 0 0.16 -0.528 3.911
20 O2' O O2' N N N 0 -0.079 -0.303 5.302
21 C3' C C3' R N N 0 1.455 0.175 3.488
22 O3' O O3' N N N 0 1.261 1.591 3.505
23 C4' C C4' N N N 0 1.808 -0.278 2.074
24 H1 H H1 N N N 0 -1.609 0.201 -5.484
25 H2 H H2 N N N 0 0.682 -0.048 -6.306
26 H3 H H3 N N N 0 2.569 -0.275 -4.762
27 H4 H H4 N N N 0 3.429 -0.394 -2.435
28 H5 H H5 N N N 0 3.018 -0.375 -0.052
29 H8 H H8 N N N 0 -2.732 0.256 1.124
30 H9 H H9 N N N 0 -3.601 0.383 -1.195
31 H10 H H10 N N N 0 -3.194 0.363 -3.579
32 H1' H H1' N N N 0 -1.165 1.081 3.397
33 HO1 H HO1 N N N 0 -2.877 -0.313 2.809
34 H2' H H2' N N N 0 0.245 -1.598 3.721
35 HO2 H HO2 N N N 0 -0.91 -0.748 5.517
36 H3' H H3' N N N 0 2.26 -0.093 4.172
37 HO3 H HO3 N N N 0 2.096 1.99 3.225
38 H4'1 H 1H4' N N N 0 2.635 0.324 1.699
39 H4'2 H 2H4' N N N 0 2.11 -1.325 2.098