Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : APC    

Bonds between two atoms of the molecule

Total Number of Bonds: 51


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 PG O1G P O doub 1.48 N N
2 PG O2G P O sing 1.61 N N
3 PG O3G P O sing 1.61 N N
4 PG O3B P O sing 1.61 N N
5 O2G HOG2 O H sing 0.97 N N
6 O3G HOG3 O H sing 0.97 N N
7 PB O1B P O doub 1.48 N N
8 PB O2B P O sing 1.61 N N
9 PB O3B P O sing 1.61 N N
10 PB C3A P C sing 1.82 N N
11 O2B HOB2 O H sing 0.97 N N
12 PA O1A P O doub 1.48 N N
13 PA O2A P O sing 1.61 N N
14 PA C3A P C sing 1.82 N N
15 PA O5' P O sing 1.61 N N
16 O2A HOA2 O H sing 0.97 N N
17 C3A H3A1 C H sing 1.09 N N
18 C3A H3A2 C H sing 1.09 N N
19 O5' C5' O C sing 1.43 N N
20 C5' C4' C C sing 1.53 N N
21 C5' H5'1 C H sing 1.09 N N
22 C5' H5'2 C H sing 1.09 N N
23 C4' O4' C O sing 1.44 N N
24 C4' C3' C C sing 1.54 N N
25 C4' H4' C H sing 1.09 N N
26 O4' C1' O C sing 1.44 N N
27 C3' O3' C O sing 1.43 N N
28 C3' C2' C C sing 1.55 N N
29 C3' H3' C H sing 1.09 N N
30 O3' HO3' O H sing 0.97 N N
31 C2' O2' C O sing 1.43 N N
32 C2' C1' C C sing 1.54 N N
33 C2' H2' C H sing 1.09 N N
34 O2' HO2' O H sing 0.97 N N
35 C1' N9 C N sing 1.46 N N
36 C1' H1' C H sing 1.09 N N
37 N9 C8 N C sing 1.36 N Y
38 N9 C4 N C sing 1.37 N Y
39 C8 N7 C N doub 1.3 N Y
40 C8 H8 C H sing 1.08 N N
41 N7 C5 N C sing 1.35 N Y
42 C5 C6 C C sing 1.4 N Y
43 C5 C4 C C doub 1.41 N Y
44 C6 N6 C N sing 1.38 N N
45 C6 N1 C N doub 1.33 N Y
46 N6 HN61 N H sing 0.97 N N
47 N6 HN62 N H sing 0.97 N N
48 N1 C2 N C sing 1.32 N Y
49 C2 N3 C N doub 1.32 N Y
50 C2 H2 C H sing 1.08 N N
51 N3 C4 N C sing 1.33 N Y