data_APC
#
_chem_comp.id APC
_chem_comp.name "DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H18 N5 O12 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2021-03-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 505.208
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code APC
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1Q0N
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
APC PG PG P 0 1 N N N N N N -6.128 1.979 4.000 1.239 -0.239 -7.092 PG APC 1
APC O1G O1G O 0 1 N N N N N N -6.550 0.584 3.746 1.766 1.135 -6.944 O1G APC 2
APC O2G O2G O 0 1 N N N N N N -4.954 2.409 3.152 2.173 -1.066 -8.109 O2G APC 3
APC O3G O3G O 0 1 N N N N N N -5.869 2.260 5.475 -0.262 -0.179 -7.671 O3G APC 4
APC PB PB P 0 1 N N S N N N -8.831 2.967 4.033 0.282 -0.093 -4.694 PB APC 5
APC O1B O1B O 0 1 N N N N N N -8.809 2.248 5.381 0.824 1.279 -4.583 O1B APC 6
APC O2B O2B O 0 1 N N N N N N -9.391 4.353 3.946 -1.202 -0.035 -5.314 O2B APC 7
APC O3B O3B O 0 1 N N N N N N -7.305 2.979 3.537 1.231 -0.968 -5.656 O3B APC 8
APC PA PA P 0 1 N N R N N N -11.427 1.800 3.170 -0.851 0.132 -1.952 PA APC 9
APC O1A O1A O 0 1 N N N N N N -11.671 1.803 4.679 -0.309 1.505 -1.841 O1A APC 10
APC O2A O2A O 0 1 N N N N N N -12.191 2.825 2.390 -2.336 0.190 -2.571 O2A APC 11
APC C3A C3A C 0 1 N N N N N N -9.688 1.916 2.859 0.222 -0.858 -3.041 C3A APC 12
APC "O5'" O5* O 0 1 N N N N N N -11.869 0.344 2.688 -0.905 -0.542 -0.491 "O5'" APC 13
APC "C5'" C5* C 0 1 N N N N N N -11.915 0.041 1.228 -1.757 0.276 0.311 "C5'" APC 14
APC "C4'" C4* C 0 1 N N R N N N -11.958 -1.459 1.125 -1.852 -0.313 1.720 "C4'" APC 15
APC "O4'" O4* O 0 1 N N N N N N -10.751 -2.020 1.634 -0.549 -0.339 2.342 "O4'" APC 16
APC "C3'" C3* C 0 1 N N S N N N -13.081 -2.180 1.774 -2.706 0.596 2.630 "C3'" APC 17
APC "O3'" O3* O 0 1 N N N N N N -14.287 -2.101 1.131 -4.043 0.099 2.721 "O3'" APC 18
APC "C2'" C2* C 0 1 N N R N N N -12.545 -3.556 1.941 -2.004 0.518 4.006 "C2'" APC 19
APC "O2'" O2* O 0 1 N N N N N N -13.207 -4.507 1.074 -2.887 -0.026 4.989 "O2'" APC 20
APC "C1'" C1* C 0 1 N N R N N N -11.059 -3.455 1.590 -0.807 -0.426 3.761 "C1'" APC 21
APC N9 N9 N 0 1 Y N N N N N -10.119 -4.151 2.452 0.361 0.023 4.520 N9 APC 22
APC C8 C8 C 0 1 Y N N N N N -9.101 -4.977 1.876 1.304 0.913 4.098 C8 APC 23
APC N7 N7 N 0 1 Y N N N N N -8.347 -5.460 2.860 2.201 1.084 5.025 N7 APC 24
APC C5 C5 C 0 1 Y N N N N N -8.893 -4.936 4.055 1.890 0.321 6.100 C5 APC 25
APC C6 C6 C 0 1 Y N N N N N -8.462 -5.146 5.344 2.479 0.095 7.355 C6 APC 26
APC N6 N6 N 0 1 N N N N N N -7.464 -5.866 5.767 3.646 0.745 7.717 N6 APC 27
APC N1 N1 N 0 1 Y N N N N N -9.184 -4.506 6.347 1.887 -0.753 8.189 N1 APC 28
APC C2 C2 C 0 1 Y N N N N N -10.187 -3.774 6.013 0.773 -1.378 7.852 C2 APC 29
APC N3 N3 N 0 1 Y N N N N N -10.721 -3.485 4.735 0.189 -1.202 6.686 N3 APC 30
APC C4 C4 C 0 1 Y N N N N N -9.970 -4.143 3.776 0.709 -0.373 5.787 C4 APC 31
APC HOG2 2HOG H 0 0 N N N N N N -4.683 3.304 3.315 2.150 -0.597 -8.954 HOG2 APC 32
APC HOG3 3HOG H 0 0 N N N N N N -5.598 3.155 5.638 -0.567 -1.093 -7.752 HOG3 APC 33
APC HOB2 2HOB H 0 0 N N N N N N -9.404 4.800 3.107 -1.517 -0.948 -5.369 HOB2 APC 34
APC HOA2 2HOA H 0 0 N N N N N N -12.039 2.823 1.452 -2.652 -0.721 -2.626 HOA2 APC 35
APC H3A1 1H3A H 0 0 N N N N N N -9.492 2.247 1.812 1.227 -0.897 -2.622 H3A1 APC 36
APC H3A2 2H3A H 0 0 N N N N N N -9.223 0.903 2.819 -0.176 -1.869 -3.123 H3A2 APC 37
APC "H5'1" 1H5* H 0 0 N N N N N N -12.749 0.549 0.692 -2.751 0.312 -0.134 "H5'1" APC 38
APC "H5'2" 2H5* H 0 0 N N N N N N -11.082 0.505 0.648 -1.347 1.284 0.366 "H5'2" APC 39
APC "H4'" H4* H 0 1 N N N N N N -12.108 -1.608 0.030 -2.274 -1.317 1.682 "H4'" APC 40
APC "H3'" H3* H 0 1 N N N N N N -13.369 -1.713 2.744 -2.705 1.620 2.256 "H3'" APC 41
APC "HO3'" *HO3 H 0 0 N N N N N N -15.005 -2.562 1.546 -4.527 0.705 3.299 "HO3'" APC 42
APC "H2'" H2* H 0 1 N N N N N N -12.713 -3.925 2.979 -1.654 1.504 4.312 "H2'" APC 43
APC "HO2'" *HO2 H 0 0 N N N N N N -12.864 -5.386 1.180 -3.640 0.576 5.052 "HO2'" APC 44
APC "H1'" H1* H 0 1 N N N N N N -10.926 -3.955 0.602 -1.067 -1.448 4.037 "H1'" APC 45
APC H8 H8 H 0 1 N N N N N N -8.921 -5.210 0.813 1.306 1.404 3.136 H8 APC 46
APC HN61 1HN6 H 0 0 N N N N N N -7.144 -6.021 6.723 4.041 0.584 8.588 HN61 APC 47
APC HN62 2HN6 H 0 0 N N N N N N -6.648 -5.521 5.261 4.071 1.359 7.098 HN62 APC 48
APC H2 H2 H 0 1 N N N N N N -10.639 -3.346 6.923 0.325 -2.060 8.560 H2 APC 49
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
APC PG O1G DOUB N N 1
APC PG O2G SING N N 2
APC PG O3G SING N N 3
APC PG O3B SING N N 4
APC O2G HOG2 SING N N 5
APC O3G HOG3 SING N N 6
APC PB O1B DOUB N N 7
APC PB O2B SING N N 8
APC PB O3B SING N N 9
APC PB C3A SING N N 10
APC O2B HOB2 SING N N 11
APC PA O1A DOUB N N 12
APC PA O2A SING N N 13
APC PA C3A SING N N 14
APC PA "O5'" SING N N 15
APC O2A HOA2 SING N N 16
APC C3A H3A1 SING N N 17
APC C3A H3A2 SING N N 18
APC "O5'" "C5'" SING N N 19
APC "C5'" "C4'" SING N N 20
APC "C5'" "H5'1" SING N N 21
APC "C5'" "H5'2" SING N N 22
APC "C4'" "O4'" SING N N 23
APC "C4'" "C3'" SING N N 24
APC "C4'" "H4'" SING N N 25
APC "O4'" "C1'" SING N N 26
APC "C3'" "O3'" SING N N 27
APC "C3'" "C2'" SING N N 28
APC "C3'" "H3'" SING N N 29
APC "O3'" "HO3'" SING N N 30
APC "C2'" "O2'" SING N N 31
APC "C2'" "C1'" SING N N 32
APC "C2'" "H2'" SING N N 33
APC "O2'" "HO2'" SING N N 34
APC "C1'" N9 SING N N 35
APC "C1'" "H1'" SING N N 36
APC N9 C8 SING Y N 37
APC N9 C4 SING Y N 38
APC C8 N7 DOUB Y N 39
APC C8 H8 SING N N 40
APC N7 C5 SING Y N 41
APC C5 C6 SING Y N 42
APC C5 C4 DOUB Y N 43
APC C6 N6 SING N N 44
APC C6 N1 DOUB Y N 45
APC N6 HN61 SING N N 46
APC N6 HN62 SING N N 47
APC N1 C2 SING Y N 48
APC C2 N3 DOUB Y N 49
APC C2 H2 SING N N 50
APC N3 C4 SING Y N 51
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
APC SMILES ACDLabs 10.04 O=P(O)(O)OP(=O)(O)CP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
APC SMILES_CANONICAL CACTVS 3.341 Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@@](O)(=O)C[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
APC SMILES CACTVS 3.341 Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)C[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
APC SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(C[P@](=O)(O)OP(=O)(O)O)O)O)O)N
APC SMILES "OpenEye OEToolkits" 1.5.0 c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(CP(=O)(O)OP(=O)(O)O)O)O)O)N
APC InChI InChI 1.03 InChI=1S/C11H18N5O12P3/c12-9-6-10(14-2-13-9)16(3-15-6)11-8(18)7(17)5(27-11)1-26-29(19,20)4-30(21,22)28-31(23,24)25/h2-3,5,7-8,11,17-18H,1,4H2,(H,19,20)(H,21,22)(H2,12,13,14)(H2,23,24,25)/t5-,7-,8-,11-/m1/s1
APC InChIKey InChI 1.03 CAWZRIXWFRFUQB-IOSLPCCCSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
APC "SYSTEMATIC NAME" ACDLabs 10.04 "5'-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]adenosine"
APC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]methyl-phosphonooxy-phosphinic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
APC 'Create component' 1999-07-08 RCSB
APC 'Modify descriptor' 2011-06-04 RCSB
APC 'Modify synonyms' 2021-03-13 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id APC
_pdbx_chem_comp_synonyms.name "ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE"
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id APC
_pdbe_chem_comp_drugbank_details.drugbank_id DB02596
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name "alpha,beta-Methyleneadenosine 5'-triphosphate"
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 7292-42-4
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
APC "ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE" wwPDB ?
APC "adenosine 5'-[alpha,beta-methylene]triphosphate" DrugBank ?
APC "adenosine 5'-[α,β-methylene]triphosphate" DrugBank ?
APC alpha,beta-MeATP DrugBank ?
APC 'alpha,beta-Methylene ATP' DrugBank ?
APC "alpha,beta-Methyleneadenosine 5'-triphosphate" DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id APC
_pdbe_chem_comp_drugbank_classification.drugbank_id DB02596
_pdbe_chem_comp_drugbank_classification.parent 'Purine ribonucleoside monophosphates'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Purine nucleotides'
_pdbe_chem_comp_drugbank_classification.superclass 'Nucleosides, nucleotides, and analogues'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as purine ribonucleoside monophosphates. These are nucleotides consisting of a purine base linked to a ribose to which one monophosphate group is attached.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
APC DB02596 '2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase' 'Escherichia coli (strain K12)' P26281 unknown 1
APC DB02596 'Pantothenate synthetase' 'Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)' P9WIL5 unknown 2
APC DB02596 'NH(3)-dependent NAD(+) synthetase' 'Bacillus subtilis (strain 168)' P08164 unknown 3
APC DB02596 'Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 3' Humans Q96T66 unknown 4
APC DB02596 'histidine kinase' 'Arthrospira platensis' O32393 unknown 5
APC DB02596 'NTPase P4' 'Pseudomonas phage phi12' Q94M05 unknown 6
APC DB02596 'Bifunctional lipase/adenylate cyclase LipJ' 'Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)' O07732 unknown 7
APC DB02596 'Carbapenam-3-carboxylate synthase' 'Pectobacterium carotovorum subsp. carotovorum' Q9XB61 unknown 8
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
APC PG P 8.660 7.728 1
APC O1G O 8.199 9.155 2
APC O2G O 10.088 8.189 3
APC O3G O 7.233 7.267 4
APC PB P 8.116 5.188 5
APC O1B O 7.003 6.193 6
APC O2B O 9.229 4.182 7
APC O3B O 9.121 6.301 8
APC PA P 7.571 2.647 9
APC O1A O 8.998 3.108 10
APC O2A O 6.144 2.186 11
APC C3A C 7.110 4.075 12
APC "O5'" O 8.032 1.220 13
APC "C5'" C 7.027 0.107 14
APC "C4'" C 7.487 -1.320 15
APC "O4'" O 6.604 -2.532 16
APC "C3'" C 8.913 -1.786 17
APC "O3'" O 10.129 -0.907 18
APC "C2'" C 8.911 -3.287 19
APC "O2'" O 10.123 -4.170 20
APC "C1'" C 7.483 -3.748 21
APC N9 N 7.018 -5.173 22
APC C8 C 7.893 -6.380 23
APC N7 N 7.018 -7.588 24
APC C5 C 5.598 -7.130 25
APC C6 C 4.299 -7.880 26
APC N6 N 4.299 -9.380 27
APC N1 N 3.000 -7.130 28
APC C2 C 3.000 -5.630 29
APC N3 N 4.299 -4.880 30
APC C4 C 5.598 -5.630 31
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
APC PG O1G DOUBLE NONE 1
APC PG O2G SINGLE NONE 2
APC PG O3G SINGLE NONE 3
APC PG O3B SINGLE NONE 4
APC PB O1B DOUBLE NONE 5
APC PB O2B SINGLE BEGINDASH 6
APC PB O3B SINGLE NONE 7
APC PB C3A SINGLE NONE 8
APC PA O1A DOUBLE NONE 9
APC PA O2A SINGLE BEGINWEDGE 10
APC PA C3A SINGLE NONE 11
APC PA "O5'" SINGLE NONE 12
APC "O5'" "C5'" SINGLE NONE 13
APC "C4'" "C5'" SINGLE BEGINDASH 14
APC "C4'" "O4'" SINGLE NONE 15
APC "C4'" "C3'" SINGLE NONE 16
APC "O4'" "C1'" SINGLE NONE 17
APC "C3'" "O3'" SINGLE BEGINWEDGE 18
APC "C3'" "C2'" SINGLE NONE 19
APC "C2'" "O2'" SINGLE BEGINWEDGE 20
APC "C2'" "C1'" SINGLE NONE 21
APC "C1'" N9 SINGLE BEGINDASH 22
APC N9 C8 SINGLE NONE 23
APC N9 C4 SINGLE NONE 24
APC C8 N7 DOUBLE NONE 25
APC N7 C5 SINGLE NONE 26
APC C5 C6 DOUBLE NONE 27
APC C5 C4 SINGLE NONE 28
APC C6 N6 SINGLE NONE 29
APC C6 N1 SINGLE NONE 30
APC N1 C2 DOUBLE NONE 31
APC C2 N3 SINGLE NONE 32
APC N3 C4 DOUBLE NONE 33
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
APC MurckoScaffold S1 scaffold 'c1ncc2ncn([C@H]3CCCO3)c2n1' InChI=1S/C9H10N4O/c1-2-8(14-3-1)13-6-12-7-4-10-5-11-9(7)13/h4-6,8H,1-3H2/t8-/m1/s1 DAKONNSVCLKUJN-MRVPVSSYSA-N
APC adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
APC imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
APC phosphate F3 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
APC purine F4 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
APC pyrimidine F5 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
APC ribose F6 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
APC "C4'" S1 1
APC "O4'" S1 1
APC "C3'" S1 1
APC "C2'" S1 1
APC "C1'" S1 1
APC N9 S1 1
APC C8 S1 1
APC N7 S1 1
APC C5 S1 1
APC C6 S1 1
APC N1 S1 1
APC C2 S1 1
APC N3 S1 1
APC C4 S1 1
APC N1 F1 1
APC C6 F1 1
APC C5 F1 1
APC C4 F1 1
APC N3 F1 1
APC C2 F1 1
APC N9 F1 1
APC C8 F1 1
APC N7 F1 1
APC N6 F1 1
APC C5 F2 1
APC C4 F2 1
APC N9 F2 1
APC C8 F2 1
APC N7 F2 1
APC O2G F3 1
APC PG F3 1
APC O1G F3 1
APC O3G F3 1
APC O3B F3 1
APC N7 F4 1
APC C8 F4 1
APC N9 F4 1
APC C4 F4 1
APC C5 F4 1
APC C6 F4 1
APC N1 F4 1
APC C2 F4 1
APC N3 F4 1
APC C5 F5 1
APC C6 F5 1
APC N1 F5 1
APC C2 F5 1
APC N3 F5 1
APC C4 F5 1
APC "C2'" F6 1
APC "C3'" F6 1
APC "C4'" F6 1
APC "O4'" F6 1
APC "C1'" F6 1
APC "C5'" F6 1
APC "O5'" F6 1
APC "O3'" F6 1
APC "O2'" F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id APC
_pdbe_chem_comp_rdkit_properties.exactmw 505.016
_pdbe_chem_comp_rdkit_properties.amw 505.210
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 17
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 8
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 15
_pdbe_chem_comp_rdkit_properties.NumHBD 7
_pdbe_chem_comp_rdkit_properties.NumHBA 17
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 31
_pdbe_chem_comp_rdkit_properties.NumAtoms 49
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 20
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.545
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 198.222
_pdbe_chem_comp_rdkit_properties.tpsa 269.900
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.327
_pdbe_chem_comp_rdkit_properties.CrippenMR 96.228
_pdbe_chem_comp_rdkit_properties.chi0v 16.660
_pdbe_chem_comp_rdkit_properties.chi1v 11.576
_pdbe_chem_comp_rdkit_properties.chi2v 6.880
_pdbe_chem_comp_rdkit_properties.chi3v 6.880
_pdbe_chem_comp_rdkit_properties.chi4v 4.991
_pdbe_chem_comp_rdkit_properties.chi0n 31.977
_pdbe_chem_comp_rdkit_properties.chi1n 15.374
_pdbe_chem_comp_rdkit_properties.chi2n 2.929
_pdbe_chem_comp_rdkit_properties.chi3n 2.929
_pdbe_chem_comp_rdkit_properties.chi4n 1.896
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.320
_pdbe_chem_comp_rdkit_properties.kappa1 9.891
_pdbe_chem_comp_rdkit_properties.kappa2 8.555
_pdbe_chem_comp_rdkit_properties.kappa3 5.732
_pdbe_chem_comp_rdkit_properties.Phi 2.730
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
APC UniChem DrugBank DB02596
APC UniChem 'Guide to Pharmacology' 4093
APC UniChem 'Guide to Pharmacology' 5405
APC UniChem 'KEGG LIGAND' C13740
APC UniChem ChEBI 35056
APC UniChem ZINC ZINC000008295117
APC UniChem fdasrs NYX13NT29D
APC UniChem SureChEMBL SCHEMBL2345274
APC UniChem ACTor 7292-42-4
APC UniChem Nikkaji J212.289H
APC UniChem BindingDb 50118221
APC UniChem 'EPA CompTox Dashboard' DTXSID20223219
APC UniChem BRENDA 105433
APC UniChem BRENDA 127461
APC UniChem BRENDA 134151
APC UniChem BRENDA 15617
APC UniChem BRENDA 15618
APC UniChem BRENDA 207532
APC UniChem BRENDA 247601
APC UniChem BRENDA 25099
APC UniChem BRENDA 29722
APC UniChem BRENDA 29723
APC UniChem BRENDA 36435
APC UniChem BRENDA 43730
APC UniChem BRENDA 43731
APC UniChem BRENDA 46072
APC UniChem BRENDA 51512
APC UniChem BRENDA 53904
APC UniChem BRENDA 7145
APC UniChem BRENDA 89172
APC UniChem BRENDA 92282
APC UniChem BRENDA 92285
APC UniChem BRENDA 92300
APC UniChem BRENDA 92303
APC UniChem BRENDA 96083
APC UniChem 'Probes And Drugs' PD050616
APC UniChem PubChem 91557
APC UniChem 'PubChem TPHARMA' 15431513
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
APC PG 6.237 1.240 2.165 ETKDGv3 1
APC O1G 5.972 2.292 1.111 ETKDGv3 2
APC O2G 7.829 1.404 2.713 ETKDGv3 3
APC O3G 5.187 1.469 3.474 ETKDGv3 4
APC PB 4.388 -0.570 1.232 ETKDGv3 5
APC O1B 3.685 -0.768 2.557 ETKDGv3 6
APC O2B 3.702 0.737 0.397 ETKDGv3 7
APC O3B 6.050 -0.315 1.496 ETKDGv3 8
APC PA 2.462 -2.383 -0.171 ETKDGv3 9
APC O1A 2.356 -3.700 -0.907 ETKDGv3 10
APC O2A 1.554 -2.461 1.257 ETKDGv3 11
APC C3A 4.209 -2.079 0.233 ETKDGv3 12
APC "O5'" 1.899 -1.122 -1.172 ETKDGv3 13
APC "C5'" 0.507 -1.269 -1.332 ETKDGv3 14
APC "C4'" -0.019 -0.183 -2.281 ETKDGv3 15
APC "O4'" -1.387 -0.420 -2.540 ETKDGv3 16
APC "C3'" 0.133 1.227 -1.700 ETKDGv3 17
APC "O3'" 0.395 2.171 -2.713 ETKDGv3 18
APC "C2'" -1.208 1.448 -1.040 ETKDGv3 19
APC "O2'" -1.603 2.801 -1.020 ETKDGv3 20
APC "C1'" -2.154 0.539 -1.836 ETKDGv3 21
APC N9 -3.099 -0.136 -0.944 ETKDGv3 22
APC C8 -3.624 -1.473 -1.103 ETKDGv3 23
APC N7 -4.749 -1.707 -0.479 ETKDGv3 24
APC C5 -5.085 -0.483 0.158 ETKDGv3 25
APC C6 -6.192 -0.127 0.806 ETKDGv3 26
APC N6 -7.245 -1.055 1.069 ETKDGv3 27
APC N1 -6.308 1.256 1.213 ETKDGv3 28
APC C2 -5.378 2.134 0.916 ETKDGv3 29
APC N3 -4.205 1.735 0.167 ETKDGv3 30
APC C4 -4.089 0.480 -0.142 ETKDGv3 31
APC HOG2 8.391 1.189 1.926 ETKDGv3 32
APC HOG3 5.409 2.370 3.821 ETKDGv3 33
APC HOB2 2.767 0.786 0.718 ETKDGv3 34
APC HOA2 1.959 -3.201 1.775 ETKDGv3 35
APC H3A1 4.786 -1.966 -0.707 ETKDGv3 36
APC H3A2 4.610 -2.942 0.803 ETKDGv3 37
APC "H5'1" -0.017 -1.177 -0.354 ETKDGv3 38
APC "H5'2" 0.267 -2.260 -1.783 ETKDGv3 39
APC "H4'" 0.544 -0.262 -3.238 ETKDGv3 40
APC "H3'" 0.950 1.288 -0.949 ETKDGv3 41
APC "HO3'" -0.280 2.054 -3.433 ETKDGv3 42
APC "H2'" -1.141 1.090 0.013 ETKDGv3 43
APC "HO2'" -1.824 3.083 -1.945 ETKDGv3 44
APC "H1'" -2.730 1.125 -2.585 ETKDGv3 45
APC H8 -3.137 -2.229 -1.705 ETKDGv3 46
APC HN61 -8.106 -0.739 1.568 ETKDGv3 47
APC HN62 -7.173 -2.054 0.773 ETKDGv3 48
APC H2 -5.492 3.164 1.224 ETKDGv3 49
#