Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : APC

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 49


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 PG P PG N N N 0 1.239 -0.239 -7.092
2 O1G O O1G N N N 0 1.766 1.135 -6.944
3 O2G O O2G N N N 0 2.173 -1.066 -8.109
4 O3G O O3G N N N 0 -0.262 -0.179 -7.671
5 PB P PB S N N 0 0.282 -0.093 -4.694
6 O1B O O1B N N N 0 0.824 1.279 -4.583
7 O2B O O2B N N N 0 -1.202 -0.035 -5.314
8 O3B O O3B N N N 0 1.231 -0.968 -5.656
9 PA P PA R N N 0 -0.851 0.132 -1.952
10 O1A O O1A N N N 0 -0.309 1.505 -1.841
11 O2A O O2A N N N 0 -2.336 0.19 -2.571
12 C3A C C3A N N N 0 0.222 -0.858 -3.041
13 O5' O O5* N N N 0 -0.905 -0.542 -0.491
14 C5' C C5* N N N 0 -1.757 0.276 0.311
15 C4' C C4* R N N 0 -1.852 -0.313 1.72
16 O4' O O4* N N N 0 -0.549 -0.339 2.342
17 C3' C C3* S N N 0 -2.706 0.596 2.63
18 O3' O O3* N N N 0 -4.043 0.099 2.721
19 C2' C C2* R N N 0 -2.004 0.518 4.006
20 O2' O O2* N N N 0 -2.887 -0.026 4.989
21 C1' C C1* R N N 0 -0.807 -0.426 3.761
22 N9 N N9 N Y N 0 0.361 0.023 4.52
23 C8 C C8 N Y N 0 1.304 0.913 4.098
24 N6 N N6 N N N 0 3.646 0.745 7.717
25 N7 N N7 N Y N 0 2.201 1.084 5.025
26 C5 C C5 N Y N 0 1.89 0.321 6.1
27 C6 C C6 N Y N 0 2.479 0.095 7.355
28 N1 N N1 N Y N 0 1.887 -0.753 8.189
29 C2 C C2 N Y N 0 0.773 -1.378 7.852
30 N3 N N3 N Y N 0 0.189 -1.202 6.686
31 C4 C C4 N Y N 0 0.709 -0.373 5.787
32 HOG2 H 2HOG N N N 0 2.15 -0.597 -8.954
33 HOG3 H 3HOG N N N 0 -0.567 -1.093 -7.752
34 HOB2 H 2HOB N N N 0 -1.517 -0.948 -5.369
35 HOA2 H 2HOA N N N 0 -2.652 -0.721 -2.626
36 H3A1 H 1H3A N N N 0 1.227 -0.897 -2.622
37 H3A2 H 2H3A N N N 0 -0.176 -1.869 -3.123
38 H5'1 H 1H5* N N N 0 -2.751 0.312 -0.134
39 H5'2 H 2H5* N N N 0 -1.347 1.284 0.366
40 H4' H H4* N N N 0 -2.274 -1.317 1.682
41 H3' H H3* N N N 0 -2.705 1.62 2.256
42 HO3' H *HO3 N N N 0 -4.527 0.705 3.299
43 H2' H H2* N N N 0 -1.654 1.504 4.312
44 HO2' H *HO2 N N N 0 -3.64 0.576 5.052
45 H1' H H1* N N N 0 -1.067 -1.448 4.037
46 H8 H H8 N N N 0 1.306 1.404 3.136
47 HN61 H 1HN6 N N N 0 4.041 0.584 8.588
48 HN62 H 2HN6 N N N 0 4.071 1.359 7.098
49 H2 H H2 N N N 0 0.325 -2.06 8.56