Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : AI1    

Bonds between two atoms of the molecule

Total Number of Bonds: 53


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 O1 C O sing 1.43 N N
2 C1 C2 C C sing 1.53 N N
3 C1 O5 C O sing 1.43 N N
4 C1 H1 C H sing 1.09 N N
5 O1 C1' O C sing 1.36 N N
6 C2 O2 C O sing 1.43 N N
7 C2 C3 C C sing 1.53 N N
8 C2 H2 C H sing 1.09 N N
9 O2 HO2 O H sing 0.97 N N
10 C3 O3 C O sing 1.43 N N
11 C3 C4 C C sing 1.53 N N
12 C3 H3 C H sing 1.09 N N
13 O3 HO3 O H sing 0.97 N N
14 C4 O4 C O sing 1.43 N N
15 C4 C5 C C sing 1.53 N N
16 C4 H4 C H sing 1.09 N N
17 O4 HO4 O H sing 0.97 N N
18 C5 O5 C O sing 1.43 N N
19 C5 C6 C C sing 1.53 N N
20 C5 H5 C H sing 1.09 N N
21 C6 O6 C O sing 1.43 N N
22 C6 HC61 C H sing 1.09 N N
23 C6 HC62 C H sing 1.09 N N
24 O6 HO6 O H sing 0.97 N N
25 C1' C2' C C doub 1.39 N Y
26 C1' C6' C C sing 1.38 N Y
27 C2' C3' C C sing 1.38 N Y
28 C2' H2' C H sing 1.08 N N
29 C3' C4' C C doub 1.38 N Y
30 C3' H3' C H sing 1.08 N N
31 C4' C5' C C sing 1.4 N Y
32 C4' H4' C H sing 1.08 N N
33 C5' C6' C C doub 1.39 N Y
34 C5' C7' C C sing 1.48 N N
35 C6' H6' C H sing 1.08 N N
36 C7' O1' C O doub 1.22 N N
37 C7' N1' C N sing 1.35 N N
38 N1' C1B N C sing 1.47 N N
39 N1' HN'1 N H sing 0.97 N N
40 C1B C2B C C sing 1.51 N N
41 C1B H1'1 C H sing 1.09 N N
42 C1B H1'2 C H sing 1.09 N N
43 C2B C3B C C doub 1.38 N Y
44 C2B C7B C C sing 1.38 N Y
45 C3B C4B C C sing 1.38 N Y
46 C3B H3B C H sing 1.08 N N
47 C4B C5B C C doub 1.38 N Y
48 C4B H4B C H sing 1.08 N N
49 C5B C6B C C sing 1.38 N Y
50 C5B H5' C H sing 1.08 N N
51 C6B C7B C C doub 1.38 N Y
52 C6B H6B C H sing 1.08 N N
53 C7B H7' C H sing 1.08 N N