Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : AI1

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 51


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 R N N 0 -0.591 0.94 -3.327
2 O1 O O1 N N N 0 -1.075 -0.03 -2.397
3 C2 C C2 R N N 0 -1.129 0.617 -4.723
4 O2 O O2 N N N 0 -2.557 0.672 -4.71
5 C3 C C3 S N N 0 -0.671 -0.79 -5.121
6 O3 O O3 N N N 0 -1.039 -1.048 -6.478
7 C4 C C4 R N N 0 0.852 -0.869 -4.974
8 O4 O O4 N N N 0 1.47 -0.005 -5.929
9 C5 C C5 R N N 0 1.239 -0.435 -3.558
10 O5 O O5 N N N 0 0.834 0.914 -3.341
11 C6 C C6 N N N 0 2.756 -0.545 -3.39
12 O6 O O6 N N N 0 3.118 -0.143 -2.068
13 C1' C C1' N Y N 0 -0.702 0.39 -1.16
14 C2' C C2' N Y N 0 -0.082 1.623 -1.004
15 C3' C C3' N Y N 0 0.299 2.057 0.251
16 C4' C C4' N Y N 0 0.066 1.267 1.359
17 C5' C C5' N Y N 0 -0.555 0.026 1.212
18 C6' C C6' N Y N 0 -0.945 -0.407 -0.055
19 C7' C C7' N N N 0 -0.806 -0.822 2.396
20 O1' O O1' N N N 0 -1.348 -1.902 2.266
21 N1' N N1' N N N 0 -0.433 -0.398 3.62
22 C1B C C1* N N N 0 -0.682 -1.239 4.794
23 C2B C C2* N Y N 0 -0.174 -0.541 6.029
24 C3B C C3* N Y N 0 -1.01 0.298 6.741
25 C4B C C4* N Y N 0 -0.544 0.939 7.874
26 C5B C C5* N Y N 0 0.756 0.74 8.295
27 C6B C C6* N Y N 0 1.592 -0.1 7.583
28 C7B C C7* N Y N 0 1.125 -0.744 6.453
29 H1 H H1 N N N 0 -0.933 1.931 -3.028
30 H2 H H2 N N N 0 -0.742 1.342 -5.44
31 HO2 H HO2 N N N 0 -2.799 1.571 -4.449
32 H3 H H3 N N N 0 -1.142 -1.525 -4.468
33 HO3 H HO3 N N N 0 -2.002 -0.975 -6.525
34 H4 H H4 N N N 0 1.181 -1.894 -5.143
35 HO4 H HO4 N N N 0 1.193 -0.311 -6.804
36 H5 H H5 N N N 0 0.746 -1.083 -2.833
37 HC61 H 1HC6 N N N 0 3.249 0.102 -4.115
38 HC62 H 2HC6 N N N 0 3.066 -1.577 -3.554
39 H2' H H2' N N N 0 0.102 2.245 -1.867
40 HO6 H HO6 N N N 0 4.08 -0.226 -2.004
41 H3' H H3' N N N 0 0.781 3.016 0.366
42 H4' H H4' N N N 0 0.366 1.608 2.338
43 H6' H H6' N N N 0 -1.427 -1.365 -0.174
44 HN'1 H 1HN' N N N 0 0.0 0.463 3.724
45 H1'1 H 1H1* N N N 0 -1.752 -1.419 4.892
46 H1'2 H 2H1* N N N 0 -0.163 -2.19 4.675
47 H3B H H3* N N N 0 -2.027 0.453 6.412
48 H4B H H4* N N N 0 -1.197 1.595 8.43
49 H5' H H5* N N N 0 1.12 1.241 9.18
50 H6B H H6* N N N 0 2.609 -0.255 7.912
51 H7' H H7* N N N 0 1.778 -1.4 5.897