Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : ABS    

Bonds between two atoms of the molecule

Total Number of Bonds: 56


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 P OP1 P O doub 1.48 N N
2 P OP2 P O sing 1.61 N N
3 P O5' P O sing 1.61 N N
4 P OP3 P O sing 1.61 N N
5 OP2 HOP2 O H sing 0.97 N N
6 O5' C5' O C sing 1.43 N N
7 C5' C4' C C sing 1.53 N N
8 C5' H5' C H sing 1.09 N N
9 C5' H5'' C H sing 1.09 N N
10 C4' O4' C O sing 1.45 N N
11 C4' C3' C C sing 1.54 N N
12 C4' H4' C H sing 1.09 N N
13 O4' C1' O C sing 1.44 N N
14 C1' N9 C N sing 1.46 N N
15 C1' C2' C C sing 1.54 N N
16 C1' H1' C H sing 1.09 N N
17 N9 C4 N C sing 1.37 N Y
18 N9 C8 N C sing 1.36 N Y
19 C4 N3 C N doub 1.33 N Y
20 C4 C5 C C sing 1.41 N Y
21 N3 C2 N C sing 1.32 N Y
22 C2 N1 C N doub 1.32 N Y
23 C2 H2 C H sing 1.08 N N
24 N1 C6 N C sing 1.33 N Y
25 C6 N6 C N sing 1.38 N N
26 C6 C5 C C doub 1.4 N Y
27 N6 CB N C sing 1.46 N N
28 N6 H6 N H sing 0.97 N N
29 CA OA C O sing 1.43 N N
30 CA CB C C sing 1.53 N N
31 CA CS6 C C sing 1.51 N N
32 CA HA C H sing 1.09 N N
33 OA HOA O H sing 0.97 N N
34 CB HB1 C H sing 1.09 N N
35 CB HB2 C H sing 1.09 N N
36 CS6 CS1 C C doub 1.38 N Y
37 CS6 CS5 C C sing 1.38 N Y
38 CS1 CS2 C C sing 1.38 N Y
39 CS1 HS1 C H sing 1.08 N N
40 CS5 CS4 C C doub 1.38 N Y
41 CS5 HS5 C H sing 1.08 N N
42 CS2 CS3 C C doub 1.38 N Y
43 CS2 HS2 C H sing 1.08 N N
44 CS4 CS3 C C sing 1.38 N Y
45 CS4 HS4 C H sing 1.08 N N
46 CS3 HS3 C H sing 1.08 N N
47 C5 N7 C N sing 1.35 N Y
48 N7 C8 N C doub 1.3 N Y
49 C8 H8 C H sing 1.08 N N
50 C2' C3' C C sing 1.54 N N
51 C2' H2' C H sing 1.09 N N
52 C2' H2'' C H sing 1.09 N N
53 C3' O3' C O sing 1.43 N N
54 C3' H3' C H sing 1.09 N N
55 O3' HO3' O H sing 0.97 N N
56 OP3 HOP3 O H sing 0.97 N N