Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : ABS

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 53


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P P P N N N 0 -1.714 0.153 -7.037
2 OP1 O O1P N N N 0 -2.397 -1.073 -6.57
3 OP2 O O2P N N N 0 -2.812 1.273 -7.402
4 O5' O O5* N N N 0 -0.749 0.706 -5.873
5 C5' C C5* N N N 0 0.197 -0.327 -5.596
6 C4' C C4* R N N 0 1.149 0.136 -4.491
7 O4' O O4* N N N 0 0.416 0.403 -3.274
8 C1' C C1* R N N 0 1.397 0.342 -2.215
9 N9 N N9 N Y N 0 0.744 0.107 -0.925
10 C4 C C4 N Y N 0 1.234 0.456 0.307
11 N3 N N3 N Y N 0 2.33 1.067 0.743
12 C2 C C2 N Y N 0 2.52 1.27 2.03
13 N1 N N1 N Y N 0 1.645 0.889 2.943
14 C6 C C6 N Y N 0 0.517 0.275 2.602
15 N6 N N6 N N N 0 -0.392 -0.12 3.567
16 CA C CA S N N 0 -1.273 -0.396 5.832
17 OA O OA N N N 0 -1.41 -1.802 5.621
18 CB C CB N N N 0 -0.117 0.136 4.983
19 CS6 C CS6 N Y N 0 -0.99 -0.131 7.288
20 CS1 C CS1 N Y N 0 -1.412 1.049 7.871
21 CS5 C CS5 N Y N 0 -0.314 -1.071 8.043
22 CS2 C CS2 N Y N 0 -1.153 1.292 9.206
23 CS4 C CS4 N Y N 0 -0.051 -0.826 9.378
24 CS3 C CS3 N Y N 0 -0.472 0.354 9.96
25 C5 C C5 N Y N 0 0.27 0.036 1.24
26 N7 N N7 N Y N 0 -0.735 -0.542 0.541
27 C8 C C8 N Y N 0 -0.459 -0.502 -0.729
28 C2' C C2* N N N 0 2.302 -0.853 -2.585
29 C3' C C3* S N N 0 2.137 -0.99 -4.115
30 O3' O O3* N N N 0 3.39 -0.798 -4.774
31 OP3 O O3P N N Y 0 -0.838 -0.184 -8.345
32 HOP2 H 2HOP N N N 0 -3.367 0.903 -8.101
33 H5' H 1H5* N N N 0 0.767 -0.549 -6.498
34 H5'' H 2H5* N N N 0 -0.329 -1.224 -5.269
35 H4' H H4* N N N 0 1.694 1.025 -4.81
36 H1' H H1* N N N 0 1.979 1.263 -2.183
37 H2 H H2 N N N 0 3.424 1.766 2.351
38 H6 H H6 N N N 0 -1.212 -0.568 3.306
39 HA H HA N N N 0 -2.197 0.105 5.544
40 HOA H HOA N N N 0 -0.573 -2.207 5.888
41 HB1 H HB1 N N N 0 0.806 -0.364 5.271
42 HB2 H HB2 N N N 0 -0.013 1.21 5.143
43 HS1 H HS1 N N N 0 -1.944 1.782 7.282
44 HS5 H HS5 N N N 0 0.014 -1.994 7.588
45 HS2 H HS2 N N N 0 -1.481 2.215 9.661
46 HS4 H HS4 N N N 0 0.48 -1.559 9.967
47 HS3 H HS3 N N N 0 -0.269 0.544 11.004
48 H8 H H8 N N N 0 -1.09 -0.893 -1.513
49 H2' H 1H2* N N N 0 1.964 -1.758 -2.081
50 H2'' H 2H2* N N N 0 3.34 -0.638 -2.331
51 H3' H H3* N N N 0 1.719 -1.964 -4.368
52 HO3' H H3T N N Y 0 3.973 -1.511 -4.478
53 HOP3 H 3HOP N N N 0 -0.41 0.639 -8.616