Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : A5Y    

Bonds between two atoms of the molecule

Total Number of Bonds: 50


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C22 C21 C C doub 1.38 N Y
2 C22 C23 C C sing 1.38 N Y
3 C21 C20 C C sing 1.38 N Y
4 C23 C18 C C doub 1.38 N Y
5 C20 F24 C F sing 1.35 N N
6 C20 C19 C C doub 1.38 N Y
7 C18 C19 C C sing 1.38 N Y
8 C18 C17 C C sing 1.51 N N
9 C17 S16 C S sing 1.81 N N
10 C27 O29 C O sing 1.44 N N
11 C27 C26 C C sing 1.54 N N
12 O29 C28 O C sing 1.44 N N
13 N9 C5 N C doub 1.31 N Y
14 N9 N8 N N sing 1.4 N Y
15 N4 C5 N C sing 1.36 N N
16 N4 C3 N C doub 1.31 N N
17 S16 C3 S C sing 1.76 N N
18 C26 N8 C N sing 1.47 N N
19 C26 C28 C C sing 1.54 N N
20 C5 C6 C C sing 1.47 N Y
21 C3 N2 C N sing 1.37 N N
22 N8 C7 N C sing 1.34 N Y
23 C6 C7 C C doub 1.37 N Y
24 C6 C1 C C sing 1.47 N N
25 N2 C1 N C sing 1.35 N N
26 N2 C10 N C sing 1.4 N N
27 C15 C10 C C doub 1.39 N Y
28 C15 C14 C C sing 1.38 N Y
29 C1 O25 C O doub 1.22 N N
30 C10 C11 C C sing 1.39 N Y
31 C14 C13 C C doub 1.38 N Y
32 C11 C12 C C doub 1.38 N Y
33 C13 C12 C C sing 1.38 N Y
34 C7 H1 C H sing 1.08 N N
35 C21 H2 C H sing 1.08 N N
36 C19 H3 C H sing 1.08 N N
37 C17 H4 C H sing 1.09 N N
38 C17 H5 C H sing 1.09 N N
39 C15 H6 C H sing 1.08 N N
40 C14 H7 C H sing 1.08 N N
41 C13 H8 C H sing 1.08 N N
42 C12 H9 C H sing 1.08 N N
43 C11 H10 C H sing 1.08 N N
44 C26 H11 C H sing 1.09 N N
45 C28 H12 C H sing 1.09 N N
46 C28 H13 C H sing 1.09 N N
47 C27 H14 C H sing 1.09 N N
48 C27 H15 C H sing 1.09 N N
49 C23 H16 C H sing 1.08 N N
50 C22 H17 C H sing 1.08 N N