Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : A5Y

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 46


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N2 N N1 N N N 0 -0.638 1.503 -0.04
2 C7 C C1 N Y N 0 -4.059 -0.048 -0.13
3 C6 C C2 N Y N 0 -2.733 0.31 -0.118
4 C5 C C3 N Y N 0 -1.956 -0.935 -0.23
5 C3 C C4 N N N 0 0.011 0.303 -0.153
6 C1 C C5 N N N 0 -1.989 1.57 -0.014
7 C21 C C6 N Y N 0 6.311 -2.14 -0.458
8 C20 C C7 N Y N 0 5.647 -2.133 0.757
9 C19 C C8 N Y N 0 4.281 -1.913 0.796
10 C18 C C9 N Y N 0 3.581 -1.701 -0.377
11 C17 C C10 N N N 0 2.094 -1.462 -0.335
12 C15 C C11 N Y N 0 0.499 3.161 1.3
13 N4 N N2 N N N 0 -0.6 -0.85 -0.243
14 C10 C C12 N Y N 0 0.111 2.683 0.055
15 C14 C C13 N Y N 0 1.238 4.325 1.391
16 C13 C C14 N Y N 0 1.591 5.013 0.244
17 C12 C C15 N Y N 0 1.207 4.538 -0.996
18 C11 C C16 N Y N 0 0.468 3.376 -1.094
19 O25 O O1 N N N 0 -2.565 2.637 0.091
20 N8 N N3 N Y N 0 -4.12 -1.384 -0.239
21 C26 C C17 N N N 0 -5.356 -2.17 -0.277
22 C28 C C18 N N N 0 -5.917 -2.516 1.115
23 O29 O O2 N N N 0 -7.201 -2.171 0.559
24 C27 C C19 N N N 0 -6.628 -1.32 -0.455
25 N9 N N4 N Y N 0 -2.826 -1.915 -0.299
26 S16 S S1 N N N 0 1.773 0.312 -0.178
27 C23 C C20 N Y N 0 4.246 -1.709 -1.589
28 C22 C C21 N Y N 0 5.611 -1.922 -1.629
29 F24 F F1 N N N 0 6.332 -2.342 1.903
30 H1 H H1 N N N 0 -4.901 0.624 -0.057
31 H2 H H2 N N N 0 7.377 -2.312 -0.49
32 H3 H H3 N N N 0 3.762 -1.908 1.743
33 H4 H H4 N N N 0 1.64 -1.834 -1.253
34 H5 H H5 N N N 0 1.666 -1.986 0.52
35 H6 H H6 N N N 0 0.22 2.627 2.196
36 H7 H H7 N N N 0 1.54 4.698 2.358
37 H8 H H8 N N N 0 2.168 5.923 0.318
38 H9 H H9 N N N 0 1.484 5.078 -1.89
39 H11 H H11 N N N 0 -5.297 -3.023 -0.952
40 H10 H H10 N N N 0 0.168 3.006 -2.063
41 H12 H H12 N N N 0 -5.819 -3.568 1.381
42 H13 H H13 N N N 0 -5.581 -1.844 1.905
43 H14 H H14 N N N 0 -6.512 -0.282 -0.144
44 H15 H H15 N N N 0 -7.095 -1.424 -1.434
45 H16 H H16 N N N 0 3.698 -1.543 -2.505
46 H17 H H17 N N N 0 6.129 -1.927 -2.577