Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : A5D    

Bonds between two atoms of the molecule

Total Number of Bonds: 49


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1 C2 N C doub 1.32 N Y
2 N1 C6 N C sing 1.33 N Y
3 C2 N3 C N sing 1.32 N Y
4 N3 C4 N C doub 1.33 N Y
5 C4 C5 C C sing 1.41 N Y
6 C4 N9 C N sing 1.37 N Y
7 C5 C6 C C doub 1.41 N Y
8 C5 N7 C N sing 1.35 N Y
9 C6 N6 C N sing 1.38 N N
10 N7 C8 N C doub 1.3 N Y
11 C8 N9 C N sing 1.36 N Y
12 N9 CAZ N C sing 1.47 N N
13 OAB CAW O C sing 1.43 N N
14 OAC CAX O C sing 1.43 N N
15 CAD CAE C C doub 1.38 N Y
16 CAD CAF C C sing 1.38 N Y
17 CAE CAG C C sing 1.38 N Y
18 CAF CAH C C doub 1.38 N Y
19 CAG CAS C C doub 1.38 N Y
20 CAH CAS C C sing 1.38 N Y
21 CAK SAQ C S sing 1.81 N N
22 CAK CAS C C sing 1.51 N N
23 CAL SAR C S sing 1.81 N N
24 CAL CAY C C sing 1.53 N N
25 OAP CAY O C sing 1.44 N N
26 OAP CAZ O C sing 1.44 N N
27 SAQ SAR S S sing 2.05 N N
28 CAW CAX C C sing 1.55 N N
29 CAW CAY C C sing 1.54 N N
30 CAX CAZ C C sing 1.54 N N
31 C2 H2 C H sing 1.08 N N
32 N6 HN6 N H sing 0.97 N N
33 N6 HN6A N H sing 0.97 N N
34 C8 H8 C H sing 1.08 N N
35 OAB HOAB O H sing 0.97 N N
36 OAC HOAC O H sing 0.97 N N
37 CAD HAD C H sing 1.08 N N
38 CAE HAE C H sing 1.08 N N
39 CAF HAF C H sing 1.08 N N
40 CAG HAG C H sing 1.08 N N
41 CAH HAH C H sing 1.08 N N
42 CAK HAK C H sing 1.09 N N
43 CAK HAKA C H sing 1.09 N N
44 CAL HAL C H sing 1.09 N N
45 CAL HALA C H sing 1.09 N N
46 CAW HAW C H sing 1.09 N N
47 CAX HAX C H sing 1.09 N N
48 CAY HAY C H sing 1.09 N N
49 CAZ HAZ C H sing 1.09 N N