Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : A5D

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 46


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N Y N 0 -6.81 0.699 1.125
2 C2 C C2 N Y N 0 -6.091 -0.281 1.643
3 N3 N N3 N Y N 0 -4.842 -0.503 1.291
4 C4 C C4 N Y N 0 -4.247 0.264 0.383
5 C5 C C5 N Y N 0 -4.97 1.32 -0.198
6 C6 C C6 N Y N 0 -6.3 1.518 0.211
7 N6 N N6 N N N 0 -7.061 2.541 -0.327
8 N7 N N7 N Y N 0 -4.142 1.935 -1.076
9 C8 C C8 N Y N 0 -2.985 1.338 -1.071
10 N9 N N9 N Y N 0 -3.0 0.301 -0.187
11 OAB O OAB N N N 0 -0.125 -3.461 -0.657
12 OAC O OAC N N N 0 -2.56 -2.948 -0.116
13 CAD C CAD N Y N 0 7.589 2.036 -0.137
14 CAE C CAE N Y N 0 7.595 1.335 1.054
15 CAF C CAF N Y N 0 6.678 1.713 -1.125
16 CAG C CAG N Y N 0 6.69 0.309 1.257
17 CAH C CAH N Y N 0 5.773 0.688 -0.922
18 CAK C CAK N N N 0 4.794 -1.133 0.489
19 CAL C CAL N N N 0 1.513 -0.619 -1.212
20 OAP O OAP N N N 0 -0.629 0.018 -0.227
21 SAQ S SAQ N N N 0 3.283 -0.468 1.24
22 SAR S SAR N N N 0 2.453 0.624 -0.283
23 CAS C CAS N Y N 0 5.78 -0.014 0.268
24 CAW C CAW S N N 0 -0.482 -2.163 -1.138
25 CAX C CAX R N N 0 -1.96 -1.852 -0.81
26 CAY C CAY S N N 0 0.308 -1.07 -0.385
27 CAZ C CAZ R N N 0 -1.888 -0.608 0.102
28 H2 H H2 N N N 0 -6.545 -0.923 2.383
29 HN6 H HN6 N N N 0 -7.978 2.667 -0.037
30 HN6A H HN6A N N N 0 -6.678 3.132 -0.993
31 H8 H H8 N N N 0 -2.139 1.623 -1.679
32 HOAB H HOAB N N N 0 -0.633 -4.181 -1.053
33 HOAC H HOAC N N N 0 -2.576 -3.772 -0.622
34 HAD H HAD N N N 0 8.293 2.84 -0.293
35 HAE H HAE N N N 0 8.307 1.587 1.826
36 HAF H HAF N N N 0 6.673 2.262 -2.055
37 HAG H HAG N N N 0 6.695 -0.239 2.187
38 HAH H HAH N N N 0 5.062 0.435 -1.694
39 HAK H HAK N N N 0 5.233 -1.878 1.153
40 HAKA H HAKA N N N 0 4.551 -1.596 -0.467
41 HAL H HAL N N N 0 1.169 -0.187 -2.151
42 HALA H HALA N N N 0 2.153 -1.477 -1.419
43 HAW H HAW N N N 0 -0.306 -2.094 -2.212
44 HAX H HAX N N N 0 -2.514 -1.629 -1.722
45 HAY H HAY N N N 0 0.632 -1.436 0.589
46 HAZ H HAZ N N N 0 -1.903 -0.903 1.151