data_A5D
#
_chem_comp.id A5D
_chem_comp.name (2R,3R,4S,5S)-2-(6-amino-9H-purin-9-yl)-5-[(benzyldisulfanyl)methyl]tetrahydrofuran-3,4-diol
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C17 H19 N5 O3 S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-08-19
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 405.494
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A5D
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3IOC
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A5D N1 N1 N 0 1 Y N N N N N -1.273 -9.094 41.890 -6.810 0.699 1.125 N1 A5D 1
A5D C2 C2 C 0 1 Y N N N N N -1.423 -8.152 40.941 -6.091 -0.281 1.643 C2 A5D 2
A5D N3 N3 N 0 1 Y N N N N N -1.082 -8.405 39.694 -4.842 -0.503 1.291 N3 A5D 3
A5D C4 C4 C 0 1 Y N N N N N -0.569 -9.613 39.376 -4.247 0.264 0.383 C4 A5D 4
A5D C5 C5 C 0 1 Y N N N N N -0.394 -10.617 40.310 -4.970 1.320 -0.198 C5 A5D 5
A5D C6 C6 C 0 1 Y N N N N N -0.778 -10.320 41.627 -6.300 1.518 0.211 C6 A5D 6
A5D N6 N6 N 0 1 N N N N N N -0.695 -11.195 42.642 -7.061 2.541 -0.327 N6 A5D 7
A5D N7 N7 N 0 1 Y N N N N N 0.126 -11.681 39.664 -4.142 1.935 -1.076 N7 A5D 8
A5D C8 C8 C 0 1 Y N N N N N 0.295 -11.351 38.389 -2.985 1.338 -1.071 C8 A5D 9
A5D N9 N9 N 0 1 Y N N N N N -0.145 -10.086 38.239 -3.000 0.301 -0.187 N9 A5D 10
A5D OAB OAB O 0 1 N N N N N N 0.600 -7.466 34.684 -0.125 -3.461 -0.657 OAB A5D 11
A5D OAC OAC O 0 1 N N N N N N 2.106 -8.226 36.997 -2.560 -2.948 -0.116 OAC A5D 12
A5D CAD CAD C 0 1 Y N N N N N 3.287 -9.757 27.544 7.589 2.036 -0.137 CAD A5D 13
A5D CAE CAE C 0 1 Y N N N N N 1.996 -10.068 27.988 7.595 1.335 1.054 CAE A5D 14
A5D CAF CAF C 0 1 Y N N N N N 4.275 -9.461 28.478 6.678 1.713 -1.125 CAF A5D 15
A5D CAG CAG C 0 1 Y N N N N N 1.705 -10.075 29.353 6.690 0.309 1.257 CAG A5D 16
A5D CAH CAH C 0 1 Y N N N N N 3.993 -9.478 29.842 5.773 0.688 -0.922 CAH A5D 17
A5D CAK CAK C 0 1 N N N N N N 2.389 -9.817 31.798 4.794 -1.133 0.489 CAK A5D 18
A5D CAL CAL C 0 1 N N N N N N -0.687 -10.601 33.978 1.513 -0.619 -1.212 CAL A5D 19
A5D OAP OAP O 0 1 N N N N N N -0.839 -10.152 36.208 -0.629 0.018 -0.227 OAP A5D 20
A5D SAQ SAQ S 0 1 N N N N N N 1.567 -11.423 32.142 3.283 -0.468 1.240 SAQ A5D 21
A5D SAR SAR S 0 1 N N N N N N 0.910 -11.408 34.077 2.453 0.624 -0.283 SAR A5D 22
A5D CAS CAS C 0 1 Y N N N N N 2.706 -9.783 30.290 5.780 -0.014 0.268 CAS A5D 23
A5D CAW CAW C 0 1 N N S N N N 0.787 -8.856 34.940 -0.482 -2.163 -1.138 CAW A5D 24
A5D CAX CAX C 0 1 N N R N N N 1.228 -9.177 36.377 -1.960 -1.852 -0.810 CAX A5D 25
A5D CAY CAY C 0 1 N N S N N N -0.637 -9.473 34.941 0.308 -1.070 -0.385 CAY A5D 26
A5D CAZ CAZ C 0 1 N N R N N N -0.161 -9.278 37.069 -1.888 -0.608 0.102 CAZ A5D 27
A5D H2 H2 H 0 1 N N N N N N -1.825 -7.184 41.203 -6.545 -0.923 2.383 H2 A5D 28
A5D HN6 HN6 H 0 1 N N N N N N -1.035 -10.768 43.480 -7.978 2.667 -0.037 HN6 A5D 29
A5D HN6A HN6A H 0 0 N N N N N N -1.247 -12.002 42.432 -6.678 3.132 -0.993 HN6A A5D 30
A5D H8 H8 H 0 1 N N N N N N 0.709 -11.980 37.615 -2.139 1.623 -1.679 H8 A5D 31
A5D HOAB HOAB H 0 0 N N N N N N 0.329 -7.343 33.782 -0.633 -4.181 -1.053 HOAB A5D 32
A5D HOAC HOAC H 0 0 N N N N N N 2.317 -8.516 37.877 -2.576 -3.772 -0.622 HOAC A5D 33
A5D HAD HAD H 0 1 N N N N N N 3.513 -9.747 26.488 8.293 2.840 -0.293 HAD A5D 34
A5D HAE HAE H 0 1 N N N N N N 1.223 -10.303 27.272 8.307 1.587 1.826 HAE A5D 35
A5D HAF HAF H 0 1 N N N N N N 5.271 -9.215 28.142 6.673 2.262 -2.055 HAF A5D 36
A5D HAG HAG H 0 1 N N N N N N 0.705 -10.306 29.689 6.695 -0.239 2.187 HAG A5D 37
A5D HAH HAH H 0 1 N N N N N N 4.772 -9.255 30.555 5.062 0.435 -1.694 HAH A5D 38
A5D HAK HAK H 0 1 N N N N N N 1.723 -8.983 32.066 5.233 -1.878 1.153 HAK A5D 39
A5D HAKA HAKA H 0 0 N N N N N N 3.316 -9.730 32.384 4.551 -1.596 -0.467 HAKA A5D 40
A5D HAL HAL H 0 1 N N N N N N -0.872 -10.232 32.958 1.169 -0.187 -2.151 HAL A5D 41
A5D HALA HALA H 0 0 N N N N N N -1.492 -11.302 34.243 2.153 -1.477 -1.419 HALA A5D 42
A5D HAW HAW H 0 1 N N N N N N 1.525 -9.213 34.207 -0.306 -2.094 -2.212 HAW A5D 43
A5D HAX HAX H 0 1 N N N N N N 1.861 -10.075 36.441 -2.514 -1.629 -1.722 HAX A5D 44
A5D HAY HAY H 0 1 N N N N N N -1.357 -8.670 34.725 0.632 -1.436 0.589 HAY A5D 45
A5D HAZ HAZ H 0 1 N N N N N N -0.539 -8.267 37.281 -1.903 -0.903 1.151 HAZ A5D 46
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A5D N1 C2 DOUB Y N 1
A5D N1 C6 SING Y N 2
A5D C2 N3 SING Y N 3
A5D N3 C4 DOUB Y N 4
A5D C4 C5 SING Y N 5
A5D C4 N9 SING Y N 6
A5D C5 C6 DOUB Y N 7
A5D C5 N7 SING Y N 8
A5D C6 N6 SING N N 9
A5D N7 C8 DOUB Y N 10
A5D C8 N9 SING Y N 11
A5D N9 CAZ SING N N 12
A5D OAB CAW SING N N 13
A5D OAC CAX SING N N 14
A5D CAD CAE DOUB Y N 15
A5D CAD CAF SING Y N 16
A5D CAE CAG SING Y N 17
A5D CAF CAH DOUB Y N 18
A5D CAG CAS DOUB Y N 19
A5D CAH CAS SING Y N 20
A5D CAK SAQ SING N N 21
A5D CAK CAS SING N N 22
A5D CAL SAR SING N N 23
A5D CAL CAY SING N N 24
A5D OAP CAY SING N N 25
A5D OAP CAZ SING N N 26
A5D SAQ SAR SING N N 27
A5D CAW CAX SING N N 28
A5D CAW CAY SING N N 29
A5D CAX CAZ SING N N 30
A5D C2 H2 SING N N 31
A5D N6 HN6 SING N N 32
A5D N6 HN6A SING N N 33
A5D C8 H8 SING N N 34
A5D OAB HOAB SING N N 35
A5D OAC HOAC SING N N 36
A5D CAD HAD SING N N 37
A5D CAE HAE SING N N 38
A5D CAF HAF SING N N 39
A5D CAG HAG SING N N 40
A5D CAH HAH SING N N 41
A5D CAK HAK SING N N 42
A5D CAK HAKA SING N N 43
A5D CAL HAL SING N N 44
A5D CAL HALA SING N N 45
A5D CAW HAW SING N N 46
A5D CAX HAX SING N N 47
A5D CAY HAY SING N N 48
A5D CAZ HAZ SING N N 49
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A5D SMILES ACDLabs 11.02 n2c1c(ncnc1n(c2)C3OC(C(O)C3O)CSSCc4ccccc4)N
A5D SMILES_CANONICAL CACTVS 3.352 Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CSSCc4ccccc4)[C@@H](O)[C@H]3O
A5D SMILES CACTVS 3.352 Nc1ncnc2n(cnc12)[CH]3O[CH](CSSCc4ccccc4)[CH](O)[CH]3O
A5D SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 c1ccc(cc1)CSSC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O
A5D SMILES "OpenEye OEToolkits" 1.7.0 c1ccc(cc1)CSSCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O
A5D InChI InChI 1.03 InChI=1S/C17H19N5O3S2/c18-15-12-16(20-8-19-15)22(9-21-12)17-14(24)13(23)11(25-17)7-27-26-6-10-4-2-1-3-5-10/h1-5,8-9,11,13-14,17,23-24H,6-7H2,(H2,18,19,20)/t11-,13-,14-,17-/m1/s1
A5D InChIKey InChI 1.03 DBQUNXDCOIKHGM-LSCFUAHRSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A5D "SYSTEMATIC NAME" ACDLabs 11.02 "(2R,3R,4S,5S)-2-(6-amino-9H-purin-9-yl)-5-[(benzyldisulfanyl)methyl]tetrahydrofuran-3,4-diol (non-preferred name)"
A5D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 (2R,3R,4S,5S)-2-(6-aminopurin-9-yl)-5-(phenylmethyldisulfanylmethyl)oxolane-3,4-diol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A5D 'Create component' 2009-08-19 RCSB
A5D 'Modify aromatic_flag' 2011-06-04 RCSB
A5D 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
A5D N1 N 3.000 -6.229 1
A5D C2 C 3.000 -4.729 2
A5D N3 N 4.299 -3.979 3
A5D C4 C 5.598 -4.729 4
A5D C5 C 5.598 -6.229 5
A5D C6 C 4.299 -6.979 6
A5D N6 N 4.299 -8.479 7
A5D N7 N 7.018 -6.686 8
A5D C8 C 7.893 -5.479 9
A5D N9 N 7.018 -4.272 10
A5D OAB O 10.129 -0.005 11
A5D OAC O 10.123 -3.269 12
A5D CAD C 7.194 8.944 13
A5D CAE C 6.188 7.831 14
A5D CAF C 8.660 8.630 15
A5D CAG C 6.649 6.404 16
A5D CAH C 9.121 7.202 17
A5D CAK C 8.577 4.662 18
A5D CAL C 7.027 1.008 19
A5D OAP O 6.604 -1.631 20
A5D SAQ S 7.571 3.549 21
A5D SAR S 8.032 2.121 22
A5D CAS C 8.116 6.089 23
A5D CAW C 8.913 -0.885 24
A5D CAX C 8.911 -2.385 25
A5D CAY C 7.487 -0.419 26
A5D CAZ C 7.483 -2.846 27
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
A5D N1 C2 DOUBLE NONE 1
A5D N1 C6 SINGLE NONE 2
A5D C2 N3 SINGLE NONE 3
A5D N3 C4 DOUBLE NONE 4
A5D C4 C5 SINGLE NONE 5
A5D C4 N9 SINGLE NONE 6
A5D C5 C6 DOUBLE NONE 7
A5D C5 N7 SINGLE NONE 8
A5D C6 N6 SINGLE NONE 9
A5D N7 C8 DOUBLE NONE 10
A5D C8 N9 SINGLE NONE 11
A5D CAZ N9 SINGLE BEGINDASH 12
A5D CAW OAB SINGLE BEGINWEDGE 13
A5D CAX OAC SINGLE BEGINWEDGE 14
A5D CAD CAE DOUBLE NONE 15
A5D CAD CAF SINGLE NONE 16
A5D CAE CAG SINGLE NONE 17
A5D CAF CAH DOUBLE NONE 18
A5D CAG CAS DOUBLE NONE 19
A5D CAH CAS SINGLE NONE 20
A5D CAK SAQ SINGLE NONE 21
A5D CAK CAS SINGLE NONE 22
A5D CAL SAR SINGLE NONE 23
A5D CAY CAL SINGLE BEGINDASH 24
A5D OAP CAY SINGLE NONE 25
A5D OAP CAZ SINGLE NONE 26
A5D SAQ SAR SINGLE NONE 27
A5D CAW CAX SINGLE NONE 28
A5D CAW CAY SINGLE NONE 29
A5D CAX CAZ SINGLE NONE 30
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
A5D MurckoScaffold S1 scaffold 'c1ccc(CSSC[C@@H]2CC[C@H](n3cnc4cncnc43)O2)cc1' InChI=1S/C17H18N4OS2/c1-2-4-13(5-3-1)9-23-24-10-14-6-7-16(22-14)21-12-20-15-8-18-11-19-17(15)21/h1-5,8,11-12,14,16H,6-7,9-10H2/t14-,16+/m0/s1 RCSIRPIUZQSKBK-GOEBONIOSA-N
A5D adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
A5D imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
A5D phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
A5D purine F4 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
A5D pyrimidine F5 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
A5D N1 S1 1
A5D C2 S1 1
A5D N3 S1 1
A5D C4 S1 1
A5D C5 S1 1
A5D C6 S1 1
A5D N7 S1 1
A5D C8 S1 1
A5D N9 S1 1
A5D CAD S1 1
A5D CAE S1 1
A5D CAF S1 1
A5D CAG S1 1
A5D CAH S1 1
A5D CAK S1 1
A5D CAL S1 1
A5D OAP S1 1
A5D SAQ S1 1
A5D SAR S1 1
A5D CAS S1 1
A5D CAW S1 1
A5D CAX S1 1
A5D CAY S1 1
A5D CAZ S1 1
A5D N1 F1 1
A5D C6 F1 1
A5D C5 F1 1
A5D C4 F1 1
A5D N3 F1 1
A5D C2 F1 1
A5D N9 F1 1
A5D C8 F1 1
A5D N7 F1 1
A5D N6 F1 1
A5D C4 F2 1
A5D C5 F2 1
A5D N7 F2 1
A5D C8 F2 1
A5D N9 F2 1
A5D CAD F3 1
A5D CAE F3 1
A5D CAG F3 1
A5D CAS F3 1
A5D CAH F3 1
A5D CAF F3 1
A5D N7 F4 1
A5D C8 F4 1
A5D N9 F4 1
A5D C4 F4 1
A5D C5 F4 1
A5D C6 F4 1
A5D N1 F4 1
A5D C2 F4 1
A5D N3 F4 1
A5D C5 F5 1
A5D C4 F5 1
A5D N3 F5 1
A5D C2 F5 1
A5D N1 F5 1
A5D C6 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id A5D
_pdbe_chem_comp_rdkit_properties.exactmw 405.093
_pdbe_chem_comp_rdkit_properties.amw 405.505
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 10
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 27
_pdbe_chem_comp_rdkit_properties.NumAtoms 46
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.353
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 190.104
_pdbe_chem_comp_rdkit_properties.tpsa 119.310
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.746
_pdbe_chem_comp_rdkit_properties.CrippenMR 102.558
_pdbe_chem_comp_rdkit_properties.chi0v 14.410
_pdbe_chem_comp_rdkit_properties.chi1v 9.027
_pdbe_chem_comp_rdkit_properties.chi2v 4.427
_pdbe_chem_comp_rdkit_properties.chi3v 4.427
_pdbe_chem_comp_rdkit_properties.chi4v 3.103
_pdbe_chem_comp_rdkit_properties.chi0n 31.777
_pdbe_chem_comp_rdkit_properties.chi1n 16.088
_pdbe_chem_comp_rdkit_properties.chi2n 3.037
_pdbe_chem_comp_rdkit_properties.chi3n 3.037
_pdbe_chem_comp_rdkit_properties.chi4n 1.897
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.850
_pdbe_chem_comp_rdkit_properties.kappa1 6.598
_pdbe_chem_comp_rdkit_properties.kappa2 8.029
_pdbe_chem_comp_rdkit_properties.kappa3 3.758
_pdbe_chem_comp_rdkit_properties.Phi 1.962
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
A5D UniChem ZINC ZINC000058638432
A5D UniChem PubChem 44472887
A5D UniChem BindingDb 84863
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
A5D N1 3.923 -3.503 0.021 ETKDGv3 1
A5D C2 2.703 -3.121 0.323 ETKDGv3 2
A5D N3 2.383 -1.715 0.443 ETKDGv3 3
A5D C4 3.330 -0.861 0.199 ETKDGv3 4
A5D C5 4.653 -1.249 -0.121 ETKDGv3 5
A5D C6 4.978 -2.538 -0.199 ETKDGv3 6
A5D N6 6.314 -2.967 -0.463 ETKDGv3 7
A5D N7 5.474 -0.093 -0.168 ETKDGv3 8
A5D C8 4.674 0.907 0.098 ETKDGv3 9
A5D N9 3.290 0.550 0.320 ETKDGv3 10
A5D OAB 0.551 3.736 2.029 ETKDGv3 11
A5D OAC 3.134 3.651 1.244 ETKDGv3 12
A5D CAD -6.612 -2.596 -0.167 ETKDGv3 13
A5D CAE -7.064 -1.396 -0.551 ETKDGv3 14
A5D CAF -5.163 -2.881 -0.188 ETKDGv3 15
A5D CAG -6.116 -0.355 -0.999 ETKDGv3 16
A5D CAH -4.301 -1.942 -0.597 ETKDGv3 17
A5D CAK -3.818 0.445 -1.455 ETKDGv3 18
A5D CAL -0.463 1.502 -0.732 ETKDGv3 19
A5D OAP 1.036 0.751 0.985 ETKDGv3 20
A5D SAQ -3.287 1.389 0.009 ETKDGv3 21
A5D SAR -1.897 2.575 -1.098 ETKDGv3 22
A5D CAS -4.796 -0.614 -1.038 ETKDGv3 23
A5D CAW 0.795 3.132 0.779 ETKDGv3 24
A5D CAX 2.249 2.772 0.587 ETKDGv3 25
A5D CAY 0.102 1.766 0.675 ETKDGv3 26
A5D CAZ 2.321 1.330 1.094 ETKDGv3 27
A5D H2 1.934 -3.862 0.489 ETKDGv3 28
A5D HN6 6.535 -3.986 -0.507 ETKDGv3 29
A5D HN6A 7.082 -2.277 -0.618 ETKDGv3 30
A5D H8 5.035 1.924 0.165 ETKDGv3 31
A5D HOAB 0.764 3.077 2.742 ETKDGv3 32
A5D HOAC 3.055 3.511 2.223 ETKDGv3 33
A5D HAD -7.306 -3.358 0.164 ETKDGv3 34
A5D HAE -8.126 -1.185 -0.532 ETKDGv3 35
A5D HAF -4.800 -3.849 0.132 ETKDGv3 36
A5D HAG -6.499 0.615 -1.292 ETKDGv3 37
A5D HAH -3.239 -2.155 -0.605 ETKDGv3 38
A5D HAK -2.937 -0.030 -1.935 ETKDGv3 39
A5D HAKA -4.280 1.136 -2.193 ETKDGv3 40
A5D HAL 0.323 1.688 -1.494 ETKDGv3 41
A5D HALA -0.762 0.436 -0.822 ETKDGv3 42
A5D HAW 0.468 3.837 -0.016 ETKDGv3 43
A5D HAX 2.474 2.796 -0.503 ETKDGv3 44
A5D HAY -0.732 1.705 1.407 ETKDGv3 45
A5D HAZ 2.617 1.301 2.165 ETKDGv3 46
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