Services
Research
Training
Industry
About us
Protein Data Bank
in Europe
Bringing Structure to Biology
Chemical Components in the PDB
pdbe.org/chem
Feedback
Share
Summary
Atoms
Bonds
In PDB Entries
Names
Descriptors
Complete Listing
Modify Search
Download Links
Molfile:
Ideal
Representative
PDB:
Ideal
Representative
Other:
mmCif
CML
Related compounds
Could not find any related compound in the PDB.
3D-Views
Ideal
Representative
PDB Links
PDB entries
PDBeChem : Chemical Bonds
Molecule :
8JV
Bonds between two atoms of the molecule
Total Number of Bonds: 61
50
10 per page
20 per page
Show all
Record
First Atom
Second Atom
First Element
Second Element
Bond Order Type
Bond Length
Bond Stereochemistry
Is Aromatic
1
C28
C29
C
C
doub
1.38
N
Y
2
C28
C27
C
C
sing
1.38
N
Y
3
C29
C30
C
C
sing
1.38
N
Y
4
C27
C26
C
C
doub
1.38
N
Y
5
C30
C25
C
C
doub
1.38
N
Y
6
C26
C25
C
C
sing
1.38
N
Y
7
C25
C24
C
C
sing
1.51
N
N
8
C24
C23
C
C
sing
1.53
N
N
9
C23
C03
C
C
sing
1.53
N
N
10
O01
C02
O
C
doub
1.21
N
N
11
C03
C02
C
C
sing
1.51
N
N
12
C03
N04
C
N
sing
1.47
N
N
13
C02
O31
C
O
sing
1.34
N
N
14
N04
C05
N
C
sing
1.47
N
N
15
C05
C06
C
C
sing
1.51
N
N
16
O22
C06
O
C
doub
1.21
N
N
17
C06
N07
C
N
sing
1.35
N
N
18
N07
C14
N
C
sing
1.47
N
N
19
N07
C08
N
C
sing
1.47
N
N
20
C14
C15
C
C
sing
1.51
N
N
21
C14
C13
C
C
sing
1.54
N
N
22
C08
C09
C
C
sing
1.51
N
N
23
C08
C12
C
C
sing
1.55
N
N
24
O10
C09
O
C
doub
1.21
N
N
25
C15
C16
C
C
doub
1.38
N
Y
26
C15
C21
C
C
sing
1.38
N
Y
27
C09
O11
C
O
sing
1.34
N
N
28
C16
C17
C
C
sing
1.38
N
Y
29
C21
C20
C
C
doub
1.38
N
Y
30
C13
C12
C
C
sing
1.55
N
N
31
C17
C18
C
C
doub
1.38
N
Y
32
C20
C18
C
C
sing
1.38
N
Y
33
C18
C19
C
C
sing
1.51
N
N
34
C12
H121
C
H
sing
1.09
N
N
35
C12
H122
C
H
sing
1.09
N
N
36
C13
H131
C
H
sing
1.09
N
N
37
C13
H132
C
H
sing
1.09
N
N
38
C14
H141
C
H
sing
1.09
N
N
39
C16
H161
C
H
sing
1.08
N
N
40
C03
H031
C
H
sing
1.09
N
N
41
C05
H052
C
H
sing
1.09
N
N
42
C05
H051
C
H
sing
1.09
N
N
43
C08
H081
C
H
sing
1.09
N
N
44
C17
H171
C
H
sing
1.08
N
N
45
C19
H193
C
H
sing
1.09
N
N
46
C19
H192
C
H
sing
1.09
N
N
47
C19
H191
C
H
sing
1.09
N
N
48
C20
H201
C
H
sing
1.08
N
N
49
C21
H211
C
H
sing
1.08
N
N
50
C23
H232
C
H
sing
1.09
N
N
51
C23
H231
C
H
sing
1.09
N
N
52
C24
H242
C
H
sing
1.09
N
N
53
C24
H241
C
H
sing
1.09
N
N
54
C26
H261
C
H
sing
1.08
N
N
55
C27
H271
C
H
sing
1.08
N
N
56
C28
H281
C
H
sing
1.08
N
N
57
C29
H291
C
H
sing
1.08
N
N
58
C30
H301
C
H
sing
1.08
N
N
59
N04
H1
N
H
sing
1.01
N
N
60
O11
H2
O
H
sing
0.97
N
N
61
O31
H3
O
H
sing
0.97
N
N