data_8JV
#
_chem_comp.id 8JV
_chem_comp.name
"(2~{S},5~{R})-5-(4-methylphenyl)-1-[2-[[(2~{S})-1-oxidanyl-1-oxidanylidene-4-phenyl-butan-2-yl]amino]ethanoyl]pyrrolidine-2-carboxylic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H28 N2 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-10-25
_chem_comp.pdbx_modified_date 2022-08-22
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 424.490
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 8JV
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7Q29
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8JV C12 C1 C 0 1 N N N N N N -13.234 -7.162 25.427 -4.411 -2.302 0.894 C12 8JV 1
8JV C13 C2 C 0 1 N N N N N N -14.331 -6.557 24.882 -4.145 -1.320 2.065 C13 8JV 2
8JV C14 C3 C 0 1 N N R N N N -14.734 -7.543 23.688 -2.841 -0.615 1.635 C14 8JV 3
8JV C15 C4 C 0 1 Y N N N N N -15.618 -8.477 24.257 -3.164 0.706 0.983 C15 8JV 4
8JV C16 C5 C 0 1 Y N N N N N -16.952 -8.111 24.435 -3.022 1.881 1.696 C16 8JV 5
8JV C02 C6 C 0 1 N N N N N N -13.880 -6.037 19.182 1.390 2.354 -0.919 C02 8JV 6
8JV C03 C7 C 0 1 N N S N N N -12.853 -7.166 19.159 1.830 1.222 -0.026 C03 8JV 7
8JV C05 C8 C 0 1 N N N N N N -14.092 -8.489 20.774 -0.228 0.016 0.391 C05 8JV 8
8JV C06 C9 C 0 1 N N N N N N -13.007 -8.336 21.841 -1.002 -1.230 0.045 C06 8JV 9
8JV C08 C10 C 0 1 N N S N N N -12.387 -7.725 24.137 -2.971 -2.719 0.503 C08 8JV 10
8JV C09 C11 C 0 1 N N N N N N -11.573 -8.984 24.435 -2.930 -3.182 -0.931 C09 8JV 11
8JV C17 C12 C 0 1 Y N N N N N -17.855 -9.003 24.994 -3.318 3.092 1.099 C17 8JV 12
8JV C18 C13 C 0 1 Y N N N N N -17.428 -10.267 25.379 -3.755 3.127 -0.212 C18 8JV 13
8JV C19 C14 C 0 1 N N N N N N -18.412 -11.264 25.993 -4.078 4.447 -0.864 C19 8JV 14
8JV C20 C15 C 0 1 Y N N N N N -16.100 -10.622 25.197 -3.896 1.952 -0.926 C20 8JV 15
8JV C21 C16 C 0 1 Y N N N N N -15.195 -9.732 24.640 -3.596 0.741 -0.329 C21 8JV 16
8JV C23 C17 C 0 1 N N N N N N -12.201 -7.181 17.761 3.315 0.938 -0.256 C23 8JV 17
8JV C24 C18 C 0 1 N N N N N N -11.422 -5.863 17.491 3.791 -0.124 0.737 C24 8JV 18
8JV C25 C19 C 0 1 Y N N N N N -10.596 -5.815 16.175 5.254 -0.404 0.511 C25 8JV 19
8JV C26 C20 C 0 1 Y N N N N N -10.139 -4.590 15.717 6.211 0.327 1.189 C26 8JV 20
8JV C27 C21 C 0 1 Y N N N N N -9.394 -4.511 14.550 7.554 0.071 0.981 C27 8JV 21
8JV C28 C22 C 0 1 Y N N N N N -9.103 -5.663 13.840 7.939 -0.917 0.094 C28 8JV 22
8JV C29 C23 C 0 1 Y N N N N N -9.557 -6.889 14.294 6.982 -1.648 -0.584 C29 8JV 23
8JV C30 C24 C 0 1 Y N N N N N -10.302 -6.970 15.463 5.640 -1.396 -0.372 C30 8JV 24
8JV N04 N1 N 0 1 N N N N N N -13.491 -8.450 19.420 1.047 0.019 -0.339 N04 8JV 25
8JV N07 N2 N 0 1 N N N N N N -13.321 -7.911 23.200 -2.165 -1.496 0.671 N07 8JV 26
8JV O01 O1 O 0 1 N N N N N N -14.979 -6.170 18.577 0.515 2.176 -1.732 O01 8JV 27
8JV O10 O2 O 0 1 N N N N N N -12.058 -10.121 24.218 -2.768 -2.381 -1.820 O10 8JV 28
8JV O11 O3 O 0 1 N N N N N N -10.391 -8.908 24.875 -3.074 -4.485 -1.219 O11 8JV 29
8JV O22 O4 O 0 1 N N N N N N -11.878 -8.566 21.595 -0.578 -1.993 -0.796 O22 8JV 30
8JV O31 O5 O 0 1 N N N N N N -13.641 -4.959 19.803 1.972 3.559 -0.810 O31 8JV 31
8JV H121 H1 H 0 0 N N N N N N -13.534 -7.990 26.086 -4.990 -3.163 1.229 H121 8JV 32
8JV H122 H2 H 0 0 N N N N N N -12.635 -6.438 25.999 -4.910 -1.798 0.066 H122 8JV 33
8JV H131 H3 H 0 0 N N N N N N -14.081 -5.556 24.500 -4.959 -0.602 2.158 H131 8JV 34
8JV H132 H4 H 0 0 N N N N N N -15.144 -6.476 25.619 -4.002 -1.863 2.999 H132 8JV 35
8JV H141 H5 H 0 0 N N N N N N -15.238 -6.952 22.909 -2.203 -0.453 2.503 H141 8JV 36
8JV H161 H6 H 0 0 N N N N N N -17.284 -7.128 24.136 -2.680 1.854 2.720 H161 8JV 37
8JV H031 H7 H 0 0 N N N N N N -12.078 -6.967 19.914 1.670 1.499 1.016 H031 8JV 38
8JV H052 H8 H 0 0 N N N N N N -14.817 -7.667 20.873 -0.810 0.895 0.110 H052 8JV 39
8JV H051 H9 H 0 0 N N N N N N -14.607 -9.451 20.915 -0.034 0.038 1.463 H051 8JV 40
8JV H081 H10 H 0 0 N N N N N N -11.689 -6.928 23.842 -2.611 -3.507 1.165 H081 8JV 41
8JV H171 H11 H 0 0 N N N N N N -18.887 -8.715 25.129 -3.207 4.010 1.656 H171 8JV 42
8JV H193 H12 H 0 0 N N N N N N -18.872 -11.865 25.195 -3.184 4.844 -1.343 H193 8JV 43
8JV H192 H13 H 0 0 N N N N N N -17.876 -11.927 26.688 -4.858 4.302 -1.612 H192 8JV 44
8JV H191 H14 H 0 0 N N N N N N -19.195 -10.717 26.538 -4.427 5.150 -0.107 H191 8JV 45
8JV H201 H15 H 0 0 N N N N N N -15.766 -11.605 25.493 -4.237 1.979 -1.950 H201 8JV 46
8JV H211 H16 H 0 0 N N N N N N -14.163 -10.020 24.507 -3.703 -0.177 -0.888 H211 8JV 47
8JV H232 H17 H 0 0 N N N N N N -12.987 -7.296 17.000 3.463 0.576 -1.273 H232 8JV 48
8JV H231 H18 H 0 0 N N N N N N -11.504 -8.029 17.699 3.887 1.854 -0.110 H231 8JV 49
8JV H242 H19 H 0 0 N N N N N N -10.728 -5.705 18.330 3.644 0.238 1.755 H242 8JV 50
8JV H241 H20 H 0 0 N N N N N N -12.152 -5.041 17.460 3.219 -1.040 0.591 H241 8JV 51
8JV H261 H21 H 0 0 N N N N N N -10.364 -3.691 16.272 5.910 1.099 1.882 H261 8JV 52
8JV H271 H22 H 0 0 N N N N N N -9.042 -3.553 14.196 8.301 0.642 1.511 H271 8JV 53
8JV H281 H23 H 0 0 N N N N N N -8.522 -5.605 12.932 8.988 -1.114 -0.072 H281 8JV 54
8JV H291 H24 H 0 0 N N N N N N -9.331 -7.786 13.737 7.283 -2.420 -1.277 H291 8JV 55
8JV H301 H25 H 0 0 N N N N N N -10.652 -7.928 15.817 4.892 -1.967 -0.902 H301 8JV 56
8JV H1 H26 H 0 1 N N N N N N -14.209 -8.601 18.741 0.895 -0.065 -1.332 H1 8JV 57
8JV H2 H28 H 0 1 N N N N N N -10.034 -9.782 24.978 -3.040 -4.734 -2.153 H2 8JV 58
8JV H3 H29 H 0 1 N N N N N N -14.381 -4.370 19.712 1.656 4.253 -1.405 H3 8JV 59
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8JV C28 C29 DOUB Y N 1
8JV C28 C27 SING Y N 2
8JV C29 C30 SING Y N 3
8JV C27 C26 DOUB Y N 4
8JV C30 C25 DOUB Y N 5
8JV C26 C25 SING Y N 6
8JV C25 C24 SING N N 7
8JV C24 C23 SING N N 8
8JV C23 C03 SING N N 9
8JV O01 C02 DOUB N N 10
8JV C03 C02 SING N N 11
8JV C03 N04 SING N N 12
8JV C02 O31 SING N N 13
8JV N04 C05 SING N N 14
8JV C05 C06 SING N N 15
8JV O22 C06 DOUB N N 16
8JV C06 N07 SING N N 17
8JV N07 C14 SING N N 18
8JV N07 C08 SING N N 19
8JV C14 C15 SING N N 20
8JV C14 C13 SING N N 21
8JV C08 C09 SING N N 22
8JV C08 C12 SING N N 23
8JV O10 C09 DOUB N N 24
8JV C15 C16 DOUB Y N 25
8JV C15 C21 SING Y N 26
8JV C09 O11 SING N N 27
8JV C16 C17 SING Y N 28
8JV C21 C20 DOUB Y N 29
8JV C13 C12 SING N N 30
8JV C17 C18 DOUB Y N 31
8JV C20 C18 SING Y N 32
8JV C18 C19 SING N N 33
8JV C12 H121 SING N N 34
8JV C12 H122 SING N N 35
8JV C13 H131 SING N N 36
8JV C13 H132 SING N N 37
8JV C14 H141 SING N N 38
8JV C16 H161 SING N N 39
8JV C03 H031 SING N N 40
8JV C05 H052 SING N N 41
8JV C05 H051 SING N N 42
8JV C08 H081 SING N N 43
8JV C17 H171 SING N N 44
8JV C19 H193 SING N N 45
8JV C19 H192 SING N N 46
8JV C19 H191 SING N N 47
8JV C20 H201 SING N N 48
8JV C21 H211 SING N N 49
8JV C23 H232 SING N N 50
8JV C23 H231 SING N N 51
8JV C24 H242 SING N N 52
8JV C24 H241 SING N N 53
8JV C26 H261 SING N N 54
8JV C27 H271 SING N N 55
8JV C28 H281 SING N N 56
8JV C29 H291 SING N N 57
8JV C30 H301 SING N N 58
8JV N04 H1 SING N N 59
8JV O11 H2 SING N N 60
8JV O31 H3 SING N N 61
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8JV InChI InChI 1.06 InChI=1S/C24H28N2O5/c1-16-7-10-18(11-8-16)20-13-14-21(24(30)31)26(20)22(27)15-25-19(23(28)29)12-9-17-5-3-2-4-6-17/h2-8,10-11,19-21,25H,9,12-15H2,1H3,(H,28,29)(H,30,31)/t19-,20+,21-/m0/s1
8JV InChIKey InChI 1.06 WVLQTFUZRYRSBE-HBMCJLEFSA-N
8JV SMILES_CANONICAL CACTVS 3.385 Cc1ccc(cc1)[C@H]2CC[C@H](N2C(=O)CN[C@@H](CCc3ccccc3)C(O)=O)C(O)=O
8JV SMILES CACTVS 3.385 Cc1ccc(cc1)[CH]2CC[CH](N2C(=O)CN[CH](CCc3ccccc3)C(O)=O)C(O)=O
8JV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 Cc1ccc(cc1)[C@H]2CC[C@H](N2C(=O)CN[C@@H](CCc3ccccc3)C(=O)O)C(=O)O
8JV SMILES "OpenEye OEToolkits" 2.0.7 Cc1ccc(cc1)C2CCC(N2C(=O)CNC(CCc3ccccc3)C(=O)O)C(=O)O
#
_pdbx_chem_comp_identifier.comp_id 8JV
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
"(2~{S},5~{R})-5-(4-methylphenyl)-1-[2-[[(2~{S})-1-oxidanyl-1-oxidanylidene-4-phenyl-butan-2-yl]amino]ethanoyl]pyrrolidine-2-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8JV 'Create component' 2021-10-25 PDBE
8JV 'Initial release' 2022-02-16 RCSB
8JV 'Modify descriptor' 2022-08-22 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
8JV C12 C 13.472 0.891 1
8JV C13 C 13.935 -0.536 2
8JV C14 C 12.722 -1.417 3
8JV C15 C 12.722 -2.917 4
8JV C16 C 14.021 -3.667 5
8JV C02 C 4.999 0.081 6
8JV C03 C 6.426 0.545 7
8JV C05 C 8.967 0.004 8
8JV C06 C 10.082 -0.999 9
8JV C08 C 11.972 0.891 10
8JV C09 C 11.090 2.104 11
8JV C17 C 14.021 -5.167 12
8JV C18 C 12.722 -5.917 13
8JV C19 C 12.722 -7.417 14
8JV C20 C 11.423 -5.167 15
8JV C21 C 11.423 -3.667 16
8JV C23 C 6.738 2.012 17
8JV C24 C 5.623 3.016 18
8JV C25 C 5.935 4.483 19
8JV C26 C 7.361 4.946 20
8JV C27 C 7.673 6.413 21
8JV C28 C 6.559 7.417 22
8JV C29 C 5.132 6.954 23
8JV C30 C 4.820 5.487 24
8JV N04 N 7.540 -0.459 25
8JV N07 N 11.508 -0.536 26
8JV O01 O 3.884 1.085 27
8JV O10 O 11.700 3.475 28
8JV O11 O 9.598 1.948 29
8JV O22 O 9.770 -2.466 30
8JV O31 O 4.687 -1.386 31
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
8JV C28 C29 DOUBLE NONE 1
8JV C28 C27 SINGLE NONE 2
8JV C29 C30 SINGLE NONE 3
8JV C27 C26 DOUBLE NONE 4
8JV C30 C25 DOUBLE NONE 5
8JV C26 C25 SINGLE NONE 6
8JV C25 C24 SINGLE NONE 7
8JV C24 C23 SINGLE NONE 8
8JV C03 C23 SINGLE BEGINDASH 9
8JV O01 C02 DOUBLE NONE 10
8JV C03 C02 SINGLE NONE 11
8JV C03 N04 SINGLE NONE 12
8JV C02 O31 SINGLE NONE 13
8JV N04 C05 SINGLE NONE 14
8JV C05 C06 SINGLE NONE 15
8JV O22 C06 DOUBLE NONE 16
8JV C06 N07 SINGLE NONE 17
8JV N07 C14 SINGLE NONE 18
8JV N07 C08 SINGLE NONE 19
8JV C14 C15 SINGLE BEGINDASH 20
8JV C14 C13 SINGLE NONE 21
8JV C08 C09 SINGLE BEGINDASH 22
8JV C08 C12 SINGLE NONE 23
8JV O10 C09 DOUBLE NONE 24
8JV C15 C16 DOUBLE NONE 25
8JV C15 C21 SINGLE NONE 26
8JV C09 O11 SINGLE NONE 27
8JV C16 C17 SINGLE NONE 28
8JV C21 C20 DOUBLE NONE 29
8JV C13 C12 SINGLE NONE 30
8JV C17 C18 DOUBLE NONE 31
8JV C20 C18 SINGLE NONE 32
8JV C18 C19 SINGLE NONE 33
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
8JV MurckoScaffold S1 scaffold 'O=C(CNCCCc1ccccc1)N1CCC[C@@H]1c1ccccc1' InChI=1S/C21H26N2O/c24-21(17-22-15-7-11-18-9-3-1-4-10-18)23-16-8-14-20(23)19-12-5-2-6-13-19/h1-6,9-10,12-13,20,22H,7-8,11,14-17H2/t20-/m1/s1 RDLVBHKAOIWXHN-HXUWFJFHSA-N
8JV amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
8JV peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
8JV phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
8JV Z2856434905 F4 fragment 'CN1CCC[C@@H]1CO' InChI=1S/C6H13NO/c1-7-4-2-3-6(7)5-8/h6,8H,2-5H2,1H3/t6-/m1/s1 VCOJPHPOVDIRJK-ZCFIWIBFSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
8JV C12 S1 1
8JV C13 S1 1
8JV C14 S1 1
8JV C15 S1 1
8JV C16 S1 1
8JV C03 S1 1
8JV C05 S1 1
8JV C06 S1 1
8JV C08 S1 1
8JV C17 S1 1
8JV C18 S1 1
8JV C20 S1 1
8JV C21 S1 1
8JV C23 S1 1
8JV C24 S1 1
8JV C25 S1 1
8JV C26 S1 1
8JV C27 S1 1
8JV C28 S1 1
8JV C29 S1 1
8JV C30 S1 1
8JV N04 S1 1
8JV N07 S1 1
8JV O22 S1 1
8JV N07 F1 1
8JV C06 F1 1
8JV O22 F1 1
8JV C05 F1 1
8JV O01 F2 1
8JV C02 F2 1
8JV C03 F2 1
8JV N04 F2 1
8JV O10 F2 2
8JV C09 F2 2
8JV C08 F2 2
8JV N07 F2 2
8JV O22 F2 3
8JV C06 F2 3
8JV C05 F2 3
8JV N04 F2 3
8JV C15 F3 1
8JV C16 F3 1
8JV C17 F3 1
8JV C18 F3 1
8JV C20 F3 1
8JV C21 F3 1
8JV C25 F3 2
8JV C30 F3 2
8JV C29 F3 2
8JV C28 F3 2
8JV C27 F3 2
8JV C26 F3 2
8JV C06 F4 1
8JV N07 F4 1
8JV C14 F4 1
8JV C13 F4 1
8JV C12 F4 1
8JV C08 F4 1
8JV C09 F4 1
8JV O11 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 8JV
_pdbe_chem_comp_rdkit_properties.exactmw 424.200
_pdbe_chem_comp_rdkit_properties.amw 424.497
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 31
_pdbe_chem_comp_rdkit_properties.NumAtoms 59
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.375
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 220.815
_pdbe_chem_comp_rdkit_properties.tpsa 106.940
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.623
_pdbe_chem_comp_rdkit_properties.CrippenMR 114.815
_pdbe_chem_comp_rdkit_properties.chi0v 14.936
_pdbe_chem_comp_rdkit_properties.chi1v 7.889
_pdbe_chem_comp_rdkit_properties.chi2v 3.267
_pdbe_chem_comp_rdkit_properties.chi3v 3.267
_pdbe_chem_comp_rdkit_properties.chi4v 2.005
_pdbe_chem_comp_rdkit_properties.chi0n 42.936
_pdbe_chem_comp_rdkit_properties.chi1n 21.652
_pdbe_chem_comp_rdkit_properties.chi2n 3.267
_pdbe_chem_comp_rdkit_properties.chi3n 3.267
_pdbe_chem_comp_rdkit_properties.chi4n 2.005
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.190
_pdbe_chem_comp_rdkit_properties.kappa1 5.981
_pdbe_chem_comp_rdkit_properties.kappa2 10.217
_pdbe_chem_comp_rdkit_properties.kappa3 5.699
_pdbe_chem_comp_rdkit_properties.Phi 1.971
#
_pdbe_chem_comp_external_mappings.comp_id 8JV
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 162624757
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
8JV C12 -2.841 -0.023 -4.405 ETKDGv3 1
8JV C13 -3.050 0.825 -3.155 ETKDGv3 2
8JV C14 -2.517 -0.022 -1.995 ETKDGv3 3
8JV C15 -1.800 0.831 -0.967 ETKDGv3 4
8JV C16 -0.582 1.353 -1.205 ETKDGv3 5
8JV C02 0.288 -3.387 1.755 ETKDGv3 6
8JV C03 0.263 -2.111 0.949 ETKDGv3 7
8JV C05 -1.585 -2.616 -0.585 ETKDGv3 8
8JV C06 -1.048 -2.133 -1.905 ETKDGv3 9
8JV C08 -1.700 -0.987 -4.064 ETKDGv3 10
8JV C09 -0.382 -0.549 -4.645 ETKDGv3 11
8JV C17 0.073 2.223 -0.206 ETKDGv3 12
8JV C18 -0.547 2.511 0.951 ETKDGv3 13
8JV C19 0.141 3.317 2.012 ETKDGv3 14
8JV C20 -1.887 1.939 1.219 ETKDGv3 15
8JV C21 -2.483 1.156 0.311 ETKDGv3 16
8JV C23 0.829 -0.934 1.758 ETKDGv3 17
8JV C24 2.324 -1.084 2.067 ETKDGv3 18
8JV C25 2.852 0.184 2.682 ETKDGv3 19
8JV C26 2.789 0.376 4.152 ETKDGv3 20
8JV C27 3.189 1.530 4.699 ETKDGv3 21
8JV C28 3.693 2.621 3.840 ETKDGv3 22
8JV C29 3.744 2.459 2.513 ETKDGv3 23
8JV C30 3.296 1.189 1.904 ETKDGv3 24
8JV N04 -1.107 -1.773 0.518 ETKDGv3 25
8JV N07 -1.636 -1.018 -2.607 ETKDGv3 26
8JV O01 -0.352 -3.471 2.839 ETKDGv3 27
8JV O10 -0.046 0.666 -4.639 ETKDGv3 28
8JV O11 0.487 -1.501 -5.168 ETKDGv3 29
8JV O22 -0.077 -2.748 -2.422 ETKDGv3 30
8JV O31 1.023 -4.476 1.300 ETKDGv3 31
8JV H121 -3.767 -0.607 -4.602 ETKDGv3 32
8JV H122 -2.630 0.608 -5.297 ETKDGv3 33
8JV H131 -4.124 1.074 -3.012 ETKDGv3 34
8JV H132 -2.475 1.771 -3.265 ETKDGv3 35
8JV H141 -3.376 -0.547 -1.524 ETKDGv3 36
8JV H161 -0.061 1.145 -2.128 ETKDGv3 37
8JV H031 0.911 -2.241 0.053 ETKDGv3 38
8JV H052 -2.695 -2.588 -0.619 ETKDGv3 39
8JV H051 -1.308 -3.682 -0.424 ETKDGv3 40
8JV H081 -1.954 -1.998 -4.454 ETKDGv3 41
8JV H171 1.067 2.601 -0.410 ETKDGv3 42
8JV H193 0.627 2.631 2.736 ETKDGv3 43
8JV H192 -0.598 3.946 2.551 ETKDGv3 44
8JV H191 0.911 3.987 1.573 ETKDGv3 45
8JV H201 -2.391 2.154 2.153 ETKDGv3 46
8JV H211 -3.464 0.750 0.520 ETKDGv3 47
8JV H232 0.691 -0.014 1.157 ETKDGv3 48
8JV H231 0.258 -0.807 2.704 ETKDGv3 49
8JV H242 2.886 -1.313 1.135 ETKDGv3 50
8JV H241 2.481 -1.932 2.768 ETKDGv3 51
8JV H261 2.412 -0.417 4.787 ETKDGv3 52
8JV H271 3.141 1.669 5.772 ETKDGv3 53
8JV H281 4.016 3.553 4.287 ETKDGv3 54
8JV H291 4.105 3.260 1.881 ETKDGv3 55
8JV H301 3.316 1.087 0.826 ETKDGv3 56
8JV H1 -1.766 -1.868 1.326 ETKDGv3 57
8JV H2 1.384 -1.231 -5.552 ETKDGv3 58
8JV H3 1.053 -5.340 1.827 ETKDGv3 59
#