Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 8JV

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 59


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C12 C C1 N N N 0 -4.411 -2.302 0.894
2 C13 C C2 N N N 0 -4.145 -1.32 2.065
3 C14 C C3 R N N 0 -2.841 -0.615 1.635
4 C15 C C4 N Y N 0 -3.164 0.706 0.983
5 C16 C C5 N Y N 0 -3.022 1.881 1.696
6 C02 C C6 N N N 0 1.39 2.354 -0.919
7 C03 C C7 S N N 0 1.83 1.222 -0.026
8 C05 C C8 N N N 0 -0.228 0.016 0.391
9 C06 C C9 N N N 0 -1.002 -1.23 0.045
10 C08 C C10 S N N 0 -2.971 -2.719 0.503
11 C09 C C11 N N N 0 -2.93 -3.182 -0.931
12 C17 C C12 N Y N 0 -3.318 3.092 1.099
13 C18 C C13 N Y N 0 -3.755 3.127 -0.212
14 C19 C C14 N N N 0 -4.078 4.447 -0.864
15 C20 C C15 N Y N 0 -3.896 1.952 -0.926
16 C21 C C16 N Y N 0 -3.596 0.741 -0.329
17 C23 C C17 N N N 0 3.315 0.938 -0.256
18 C24 C C18 N N N 0 3.791 -0.124 0.737
19 C25 C C19 N Y N 0 5.254 -0.404 0.511
20 C26 C C20 N Y N 0 6.211 0.327 1.189
21 C27 C C21 N Y N 0 7.554 0.071 0.981
22 C28 C C22 N Y N 0 7.939 -0.917 0.094
23 C29 C C23 N Y N 0 6.982 -1.648 -0.584
24 O01 O O1 N N N 0 0.515 2.176 -1.732
25 C30 C C24 N Y N 0 5.64 -1.396 -0.372
26 N04 N N1 N N N 0 1.047 0.019 -0.339
27 N07 N N2 N N N 0 -2.165 -1.496 0.671
28 O10 O O2 N N N 0 -2.768 -2.381 -1.82
29 O11 O O3 N N N 0 -3.074 -4.485 -1.219
30 O22 O O4 N N N 0 -0.578 -1.993 -0.796
31 O31 O O5 N N N 0 1.972 3.559 -0.81
32 H121 H H1 N N N 0 -4.99 -3.163 1.229
33 H122 H H2 N N N 0 -4.91 -1.798 0.066
34 H131 H H3 N N N 0 -4.959 -0.602 2.158
35 H132 H H4 N N N 0 -4.002 -1.863 2.999
36 H141 H H5 N N N 0 -2.203 -0.453 2.503
37 H161 H H6 N N N 0 -2.68 1.854 2.72
38 H031 H H7 N N N 0 1.67 1.499 1.016
39 H052 H H8 N N N 0 -0.81 0.895 0.11
40 H051 H H9 N N N 0 -0.034 0.038 1.463
41 H081 H H10 N N N 0 -2.611 -3.507 1.165
42 H171 H H11 N N N 0 -3.207 4.01 1.656
43 H193 H H12 N N N 0 -3.184 4.844 -1.343
44 H192 H H13 N N N 0 -4.858 4.302 -1.612
45 H191 H H14 N N N 0 -4.427 5.15 -0.107
46 H201 H H15 N N N 0 -4.237 1.979 -1.95
47 H211 H H16 N N N 0 -3.703 -0.177 -0.888
48 H232 H H17 N N N 0 3.463 0.576 -1.273
49 H231 H H18 N N N 0 3.887 1.854 -0.11
50 H242 H H19 N N N 0 3.644 0.238 1.755
51 H241 H H20 N N N 0 3.219 -1.04 0.591
52 H261 H H21 N N N 0 5.91 1.099 1.882
53 H271 H H22 N N N 0 8.301 0.642 1.511
54 H281 H H23 N N N 0 8.988 -1.114 -0.072
55 H291 H H24 N N N 0 7.283 -2.42 -1.277
56 H301 H H25 N N N 0 4.892 -1.967 -0.902
57 H1 H H26 N N N 0 0.895 -0.065 -1.332
58 H2 H H28 N N N 0 -3.04 -4.734 -2.153
59 H3 H H29 N N N 0 1.656 4.253 -1.405