Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 6VM    

Bonds between two atoms of the molecule

Total Number of Bonds: 62


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C12 C11 C C sing 1.53 N N
2 C13 C11 C C sing 1.53 N N
3 C14 C11 C C sing 1.53 N N
4 C14 C7 C C sing 1.51 N N
5 C11 C10 C C sing 1.53 N N
6 N2 C7 N C sing 1.37 N N
7 N2 C6 N C sing 1.4 N N
8 C7 C8 C C doub 1.35 N N
9 C10 C9 C C sing 1.5 N N
10 N1 C6 N C doub 1.3 N Y
11 N1 N N N sing 1.4 N Y
12 C6 C23 C C sing 1.41 N Y
13 C8 C9 C C sing 1.41 N N
14 C8 C15 C C sing 1.51 N N
15 C9 O C O doub 1.22 N N
16 N C5 N C sing 1.35 N Y
17 C23 C15 C C sing 1.5 N N
18 C23 C5 C C doub 1.34 N Y
19 C15 C29 C C sing 1.53 N N
20 C15 C30 C C sing 1.51 N N
21 C5 C4 C C sing 1.51 N N
22 C28 C30 C C doub 1.38 N Y
23 C28 C27 C C sing 1.38 N Y
24 C30 C24 C C sing 1.38 N Y
25 C4 C1 C C sing 1.53 N N
26 C27 C26 C C doub 1.38 N Y
27 C3 C1 C C sing 1.53 N N
28 C24 C25 C C doub 1.38 N Y
29 C1 C2 C C sing 1.53 N N
30 C1 C C C sing 1.53 N N
31 C26 C25 C C sing 1.38 N Y
32 C2 H1 C H sing 1.09 N N
33 C2 H2 C H sing 1.09 N N
34 C2 H3 C H sing 1.09 N N
35 C3 H4 C H sing 1.09 N N
36 C3 H5 C H sing 1.09 N N
37 C3 H6 C H sing 1.09 N N
38 C4 H7 C H sing 1.09 N N
39 C4 H8 C H sing 1.09 N N
40 C12 H9 C H sing 1.09 N N
41 C12 H10 C H sing 1.09 N N
42 C12 H11 C H sing 1.09 N N
43 C13 H12 C H sing 1.09 N N
44 C13 H13 C H sing 1.09 N N
45 C13 H14 C H sing 1.09 N N
46 C14 H15 C H sing 1.09 N N
47 C14 H16 C H sing 1.09 N N
48 C24 H17 C H sing 1.08 N N
49 C25 H18 C H sing 1.08 N N
50 C26 H19 C H sing 1.08 N N
51 C27 H20 C H sing 1.08 N N
52 C10 H22 C H sing 1.09 N N
53 C10 H23 C H sing 1.09 N N
54 C29 H24 C H sing 1.09 N N
55 C29 H25 C H sing 1.09 N N
56 C29 H26 C H sing 1.09 N N
57 C28 H27 C H sing 1.08 N N
58 C H28 C H sing 1.09 N N
59 C H29 C H sing 1.09 N N
60 C H30 C H sing 1.09 N N
61 N H31 N H sing 0.97 N N
62 N2 H21 N H sing 0.97 N N