Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 6VM

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 59


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 -3.912 -1.139 0.918
2 C2 C C2 N N N 0 -2.941 -1.892 1.829
3 C3 C C3 N N N 0 -5.019 -0.506 1.763
4 C4 C C4 N N N 0 -3.157 -0.042 0.163
5 C5 C C5 N Y N 0 -2.134 -0.672 -0.746
6 C6 C C6 N Y N 0 -0.216 -1.262 -1.717
7 C12 C C7 N N N 0 5.527 -1.482 0.336
8 C13 C C8 N N N 0 3.328 -2.317 1.19
9 C14 C C9 N N N 0 3.439 -1.085 -0.984
10 C24 C C10 N Y N 0 -0.784 2.672 0.755
11 C25 C C11 N Y N 0 -0.941 4.005 0.424
12 C26 C C12 N Y N 0 -0.472 4.475 -0.789
13 C27 C C13 N Y N 0 0.153 3.613 -1.67
14 O O O1 N N N 0 1.863 1.131 2.029
15 C9 C C14 N N N 0 2.329 0.452 1.135
16 C8 C C15 N N N 0 1.478 -0.022 0.119
17 C7 C C16 N N N 0 1.963 -0.765 -0.898
18 C11 C C17 N N N 0 4.027 -1.193 0.424
19 C10 C C18 N N N 0 3.799 0.142 1.141
20 C15 C C19 S N N 0 0.017 0.358 0.239
21 C29 C C20 N N N 0 -0.45 0.135 1.678
22 C30 C C21 N Y N 0 -0.154 1.811 -0.123
23 C28 C C22 N Y N 0 0.31 2.28 -1.338
24 C23 C C23 N Y N 0 -0.806 -0.488 -0.69
25 C C C24 N N N 0 -4.531 -2.114 -0.085
26 N N N1 N Y N 0 -2.388 -1.53 -1.762
27 N1 N N2 N Y N 0 -1.165 -1.881 -2.355
28 N2 N N3 N N N 0 1.17 -1.271 -1.897
29 H1 H H1 N N N 0 -2.152 -2.342 1.227
30 H2 H H2 N N N 0 -2.5 -1.197 2.544
31 H3 H H3 N N N 0 -3.479 -2.673 2.367
32 H4 H H4 N N N 0 -4.578 0.189 2.478
33 H5 H H5 N N N 0 -5.711 0.031 1.114
34 H6 H H6 N N N 0 -5.557 -1.287 2.301
35 H7 H H7 N N N 0 -3.861 0.541 -0.431
36 H8 H H8 N N N 0 -2.655 0.611 0.877
37 H9 H H9 N N N 0 5.685 -2.427 -0.184
38 H10 H H10 N N N 0 6.021 -0.679 -0.21
39 H11 H H11 N N N 0 5.943 -1.547 1.341
40 H12 H H12 N N N 0 3.742 -2.384 2.196
41 H13 H H13 N N N 0 2.26 -2.107 1.25
42 H14 H H14 N N N 0 3.484 -3.263 0.67
43 H15 H H15 N N N 0 3.575 -2.032 -1.507
44 H16 H H16 N N N 0 3.951 -0.293 -1.531
45 H17 H H17 N N N 0 -1.15 2.305 1.703
46 H18 H H18 N N N 0 -1.429 4.679 1.112
47 H19 H H19 N N N 0 -0.595 5.516 -1.048
48 H20 H H20 N N N 0 0.519 3.98 -2.617
49 H22 H H22 N N N 0 4.341 0.933 0.623
50 H23 H H23 N N N 0 4.152 0.069 2.17
51 H24 H H24 N N N 0 -0.177 0.997 2.287
52 H25 H H25 N N N 0 -1.533 0.009 1.693
53 H26 H H26 N N N 0 0.026 -0.759 2.081
54 H27 H H27 N N N 0 0.794 1.605 -2.028
55 H28 H H28 N N N 0 -5.203 -2.795 0.437
56 H29 H H29 N N N 0 -5.09 -1.557 -0.836
57 H30 H H30 N N N 0 -3.74 -2.686 -0.571
58 H31 H H31 N N N 0 -3.264 -1.847 -2.033
59 H21 H H21 N N N 0 1.563 -1.627 -2.71