Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 5KB    

Bonds between two atoms of the molecule

Total Number of Bonds: 54


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O01 C02 O C sing 1.36 N N
2 C03 C02 C C doub 1.39 N Y
3 C03 C04 C C sing 1.38 N Y
4 C02 C27 C C sing 1.39 N Y
5 C04 C05 C C doub 1.39 N Y
6 C27 C26 C C doub 1.38 N Y
7 C05 C26 C C sing 1.39 N Y
8 C05 C06 C C sing 1.48 N N
9 C06 C07 C C sing 1.48 N N
10 C06 C14 C C doub 1.34 N N
11 C15 C14 C C sing 1.51 N N
12 C15 C16 C C sing 1.53 N N
13 C07 C08 C C doub 1.39 N Y
14 C07 C13 C C sing 1.39 N Y
15 C08 C09 C C sing 1.38 N Y
16 C13 C12 C C doub 1.38 N Y
17 C14 C25 C C sing 1.51 N N
18 C09 C10 C C doub 1.39 N Y
19 C12 C10 C C sing 1.39 N Y
20 C10 O11 C O sing 1.36 N N
21 C16 C17 C C sing 1.53 N N
22 C25 C18 C C sing 1.54 N N
23 C17 C18 C C sing 1.53 N N
24 C18 C19 C C sing 1.51 N N
25 C20 C19 C C doub 1.38 N Y
26 C20 C21 C C sing 1.38 N Y
27 C19 C24 C C sing 1.38 N Y
28 C21 C22 C C doub 1.38 N Y
29 C24 C23 C C doub 1.38 N Y
30 C22 C23 C C sing 1.38 N Y
31 O01 H1 O H sing 0.97 N N
32 C03 H2 C H sing 1.08 N N
33 C04 H3 C H sing 1.08 N N
34 C08 H5 C H sing 1.08 N N
35 C09 H6 C H sing 1.08 N N
36 O11 H7 O H sing 0.97 N N
37 C12 H8 C H sing 1.08 N N
38 C13 H9 C H sing 1.08 N N
39 C15 H11 C H sing 1.09 N N
40 C15 H12 C H sing 1.09 N N
41 C16 H13 C H sing 1.09 N N
42 C16 H14 C H sing 1.09 N N
43 C17 H15 C H sing 1.09 N N
44 C17 H16 C H sing 1.09 N N
45 C18 H17 C H sing 1.09 N N
46 C20 H18 C H sing 1.08 N N
47 C21 H19 C H sing 1.08 N N
48 C22 H20 C H sing 1.08 N N
49 C23 H21 C H sing 1.08 N N
50 C24 H22 C H sing 1.08 N N
51 C25 H23 C H sing 1.09 N N
52 C25 H24 C H sing 1.09 N N
53 C26 H25 C H sing 1.08 N N
54 C27 H26 C H sing 1.08 N N