data_5KB
#
_chem_comp.id 5KB
_chem_comp.name "4,4'-{[(3R)-3-phenylcyclohexylidene]methanediyl}diphenol"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C25 H24 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-10-08
_chem_comp.pdbx_modified_date 2016-04-29
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 356.457
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 5KB
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5E14
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5KB O01 O1 O 0 1 N N N N N N 16.537 -0.285 0.755 6.471 1.647 0.320 O01 5KB 1
5KB C02 C1 C 0 1 Y N N N N N 17.255 -0.832 1.850 5.177 1.251 0.191 C02 5KB 2
5KB C03 C2 C 0 1 Y N N N N N 18.600 -1.151 1.700 4.528 0.645 1.258 C03 5KB 3
5KB C04 C3 C 0 1 Y N N N N N 19.311 -1.690 2.778 3.216 0.242 1.130 C04 5KB 4
5KB C05 C4 C 0 1 Y N N N N N 18.670 -1.910 4.010 2.541 0.444 -0.073 C05 5KB 5
5KB C06 C5 C 0 1 N N N N N N 19.487 -2.506 5.191 1.129 0.012 -0.215 C06 5KB 6
5KB C07 C6 C 0 1 Y N N N N N 20.776 -1.728 5.645 0.785 -1.428 -0.149 C07 5KB 7
5KB C08 C7 C 0 1 Y N N N N N 20.699 -0.339 5.834 1.247 -2.303 -1.132 C08 5KB 8
5KB C09 C8 C 0 1 Y N N N N N 21.819 0.371 6.237 0.925 -3.642 -1.068 C09 5KB 9
5KB C10 C9 C 0 1 Y N N N N N 23.018 -0.288 6.451 0.140 -4.120 -0.027 C10 5KB 10
5KB O11 O2 O 0 1 N N N N N N 24.159 0.446 6.865 -0.176 -5.439 0.033 O11 5KB 11
5KB C12 C10 C 0 1 Y N N N N N 23.103 -1.657 6.263 -0.323 -3.251 0.953 C12 5KB 12
5KB C13 C11 C 0 1 Y N N N N N 21.974 -2.377 5.849 0.001 -1.912 0.898 C13 5KB 13
5KB C14 C12 C 0 1 N N N N N N 18.872 -3.504 6.089 0.166 0.923 -0.402 C14 5KB 14
5KB C15 C13 C 0 1 N N N N N N 18.033 -4.618 5.507 0.497 2.398 -0.478 C15 5KB 15
5KB C16 C14 C 0 1 N N N N N N 17.069 -5.193 6.549 -0.410 3.152 0.500 C16 5KB 16
5KB C17 C15 C 0 1 N N N N N N 17.810 -5.693 7.795 -1.872 2.817 0.198 C17 5KB 17
5KB C18 C16 C 0 1 N N R N N N 18.663 -4.603 8.406 -2.123 1.328 0.437 C18 5KB 18
5KB C19 C17 C 0 1 Y N N N N N 19.573 -5.244 9.458 -3.584 1.023 0.223 C19 5KB 19
5KB C20 C18 C 0 1 Y N N N N N 20.846 -5.735 9.085 -4.166 1.262 -1.008 C20 5KB 20
5KB C21 C19 C 0 1 Y N N N N N 21.685 -6.321 10.051 -5.505 0.983 -1.205 C21 5KB 21
5KB C22 C20 C 0 1 Y N N N N N 21.268 -6.417 11.367 -6.263 0.465 -0.171 C22 5KB 22
5KB C23 C21 C 0 1 Y N N N N N 20.011 -5.929 11.738 -5.680 0.226 1.060 C23 5KB 23
5KB C24 C22 C 0 1 Y N N N N N 19.161 -5.335 10.767 -4.340 0.501 1.255 C24 5KB 24
5KB C25 C23 C 0 1 N N N N N N 19.578 -3.915 7.381 -1.280 0.504 -0.549 C25 5KB 25
5KB C26 C24 C 0 1 Y N N N N N 17.337 -1.584 4.155 3.195 1.053 -1.143 C26 5KB 26
5KB C27 C25 C 0 1 Y N N N N N 16.618 -1.044 3.063 4.506 1.458 -1.007 C27 5KB 27
5KB H1 H1 H 0 1 N N N N N N 15.638 -0.123 1.015 6.574 2.552 0.646 H1 5KB 28
5KB H2 H2 H 0 1 N N N N N N 19.094 -0.983 0.755 5.052 0.489 2.190 H2 5KB 29
5KB H3 H3 H 0 1 N N N N N N 20.356 -1.938 2.663 2.711 -0.229 1.960 H3 5KB 30
5KB H5 H5 H 0 1 N N N N N N 19.765 0.177 5.665 1.858 -1.932 -1.942 H5 5KB 31
5KB H6 H6 H 0 1 N N N N N N 21.757 1.439 6.384 1.283 -4.320 -1.828 H6 5KB 32
5KB H7 H7 H 0 1 N N N N N N 24.896 -0.145 6.968 0.459 -5.974 0.529 H7 5KB 33
5KB H8 H8 H 0 1 N N N N N N 24.038 -2.169 6.435 -0.933 -3.626 1.761 H8 5KB 34
5KB H9 H9 H 0 1 N N N N N N 22.043 -3.443 5.690 -0.355 -1.238 1.663 H9 5KB 35
5KB H11 H11 H 0 1 N N N N N N 17.452 -4.224 4.660 1.541 2.553 -0.204 H11 5KB 36
5KB H12 H12 H 0 1 N N N N N N 18.698 -5.420 5.153 0.324 2.760 -1.492 H12 5KB 37
5KB H13 H13 H 0 1 N N N N N N 16.358 -4.408 6.848 -0.172 2.853 1.520 H13 5KB 38
5KB H14 H14 H 0 1 N N N N N N 16.519 -6.034 6.100 -0.252 4.224 0.389 H14 5KB 39
5KB H15 H15 H 0 1 N N N N N N 17.073 -6.029 8.539 -2.520 3.404 0.849 H15 5KB 40
5KB H16 H16 H 0 1 N N N N N N 18.456 -6.537 7.512 -2.091 3.059 -0.842 H16 5KB 41
5KB H17 H17 H 0 1 N N N N N N 18.019 -3.851 8.886 -1.845 1.072 1.460 H17 5KB 42
5KB H18 H18 H 0 1 N N N N N N 21.174 -5.660 8.059 -3.574 1.666 -1.816 H18 5KB 43
5KB H19 H19 H 0 1 N N N N N N 22.656 -6.697 9.765 -5.960 1.169 -2.167 H19 5KB 44
5KB H20 H20 H 0 1 N N N N N N 21.913 -6.868 12.107 -7.309 0.248 -0.324 H20 5KB 45
5KB H21 H21 H 0 1 N N N N N N 19.686 -6.004 12.765 -6.272 -0.178 1.868 H21 5KB 46
5KB H22 H22 H 0 1 N N N N N N 18.192 -4.955 11.056 -3.884 0.311 2.216 H22 5KB 47
5KB H23 H23 H 0 1 N N N N N N 20.392 -4.609 7.124 -1.614 0.694 -1.568 H23 5KB 48
5KB H24 H24 H 0 1 N N N N N N 20.000 -3.012 7.846 -1.379 -0.557 -0.319 H24 5KB 49
5KB H25 H25 H 0 1 N N N N N N 16.843 -1.741 5.102 2.675 1.211 -2.077 H25 5KB 50
5KB H26 H26 H 0 1 N N N N N N 15.573 -0.797 3.174 5.013 1.933 -1.834 H26 5KB 51
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5KB O01 C02 SING N N 1
5KB C03 C02 DOUB Y N 2
5KB C03 C04 SING Y N 3
5KB C02 C27 SING Y N 4
5KB C04 C05 DOUB Y N 5
5KB C27 C26 DOUB Y N 6
5KB C05 C26 SING Y N 7
5KB C05 C06 SING N N 8
5KB C06 C07 SING N N 9
5KB C06 C14 DOUB N N 10
5KB C15 C14 SING N N 11
5KB C15 C16 SING N N 12
5KB C07 C08 DOUB Y N 13
5KB C07 C13 SING Y N 14
5KB C08 C09 SING Y N 15
5KB C13 C12 DOUB Y N 16
5KB C14 C25 SING N N 17
5KB C09 C10 DOUB Y N 18
5KB C12 C10 SING Y N 19
5KB C10 O11 SING N N 20
5KB C16 C17 SING N N 21
5KB C25 C18 SING N N 22
5KB C17 C18 SING N N 23
5KB C18 C19 SING N N 24
5KB C20 C19 DOUB Y N 25
5KB C20 C21 SING Y N 26
5KB C19 C24 SING Y N 27
5KB C21 C22 DOUB Y N 28
5KB C24 C23 DOUB Y N 29
5KB C22 C23 SING Y N 30
5KB O01 H1 SING N N 31
5KB C03 H2 SING N N 32
5KB C04 H3 SING N N 33
5KB C08 H5 SING N N 34
5KB C09 H6 SING N N 35
5KB O11 H7 SING N N 36
5KB C12 H8 SING N N 37
5KB C13 H9 SING N N 38
5KB C15 H11 SING N N 39
5KB C15 H12 SING N N 40
5KB C16 H13 SING N N 41
5KB C16 H14 SING N N 42
5KB C17 H15 SING N N 43
5KB C17 H16 SING N N 44
5KB C18 H17 SING N N 45
5KB C20 H18 SING N N 46
5KB C21 H19 SING N N 47
5KB C22 H20 SING N N 48
5KB C23 H21 SING N N 49
5KB C24 H22 SING N N 50
5KB C25 H23 SING N N 51
5KB C25 H24 SING N N 52
5KB C26 H25 SING N N 53
5KB C27 H26 SING N N 54
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5KB SMILES ACDLabs 12.01 Oc1ccc(cc1)/C(c2ccc(O)cc2)=C3/CC(CCC3)c4ccccc4
5KB InChI InChI 1.03 InChI=1S/C25H24O2/c26-23-13-9-19(10-14-23)25(20-11-15-24(27)16-12-20)22-8-4-7-21(17-22)18-5-2-1-3-6-18/h1-3,5-6,9-16,21,26-27H,4,7-8,17H2/t21-/m1/s1
5KB InChIKey InChI 1.03 VCHVPGQUQBYGKQ-OAQYLSRUSA-N
5KB SMILES_CANONICAL CACTVS 3.385 Oc1ccc(cc1)C(=C2CCC[C@H](C2)c3ccccc3)c4ccc(O)cc4
5KB SMILES CACTVS 3.385 Oc1ccc(cc1)C(=C2CCC[CH](C2)c3ccccc3)c4ccc(O)cc4
5KB SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 c1ccc(cc1)[C@@H]2CCCC(=C(c3ccc(cc3)O)c4ccc(cc4)O)C2
5KB SMILES "OpenEye OEToolkits" 1.9.2 c1ccc(cc1)C2CCCC(=C(c3ccc(cc3)O)c4ccc(cc4)O)C2
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5KB "SYSTEMATIC NAME" ACDLabs 12.01 "4,4'-{[(3R)-3-phenylcyclohexylidene]methanediyl}diphenol"
5KB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 4-[(4-hydroxyphenyl)-[(3R)-3-phenylcyclohexylidene]methyl]phenol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5KB 'Create component' 2015-10-08 RCSB
5KB 'Initial release' 2016-05-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
5KB O01 O 13.392 4.410 1
5KB C02 C 12.093 3.660 2
5KB C03 C 10.794 4.410 3
5KB C04 C 9.495 3.660 4
5KB C05 C 9.495 2.160 5
5KB C06 C 8.196 1.410 6
5KB C07 C 6.897 2.160 7
5KB C08 C 5.598 1.410 8
5KB C09 C 4.299 2.160 9
5KB C10 C 4.299 3.660 10
5KB O11 O 3.000 4.410 11
5KB C12 C 5.598 4.410 12
5KB C13 C 6.897 3.660 13
5KB C14 C 8.196 -0.090 14
5KB C15 C 9.495 -0.840 15
5KB C16 C 9.495 -2.340 16
5KB C17 C 8.196 -3.090 17
5KB C18 C 6.897 -2.340 18
5KB C19 C 5.598 -3.090 19
5KB C20 C 5.598 -4.590 20
5KB C21 C 4.299 -5.340 21
5KB C22 C 3.000 -4.590 22
5KB C23 C 3.000 -3.090 23
5KB C24 C 4.299 -2.340 24
5KB C25 C 6.897 -0.840 25
5KB C26 C 10.794 1.410 26
5KB C27 C 12.093 2.160 27
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
5KB O01 C02 SINGLE NONE 1
5KB C03 C02 DOUBLE NONE 2
5KB C03 C04 SINGLE NONE 3
5KB C02 C27 SINGLE NONE 4
5KB C04 C05 DOUBLE NONE 5
5KB C27 C26 DOUBLE NONE 6
5KB C05 C26 SINGLE NONE 7
5KB C05 C06 SINGLE NONE 8
5KB C06 C07 SINGLE NONE 9
5KB C06 C14 DOUBLE NONE 10
5KB C15 C14 SINGLE NONE 11
5KB C15 C16 SINGLE NONE 12
5KB C07 C08 DOUBLE NONE 13
5KB C07 C13 SINGLE NONE 14
5KB C08 C09 SINGLE NONE 15
5KB C13 C12 DOUBLE NONE 16
5KB C14 C25 SINGLE NONE 17
5KB C09 C10 DOUBLE NONE 18
5KB C12 C10 SINGLE NONE 19
5KB C10 O11 SINGLE NONE 20
5KB C16 C17 SINGLE NONE 21
5KB C25 C18 SINGLE NONE 22
5KB C17 C18 SINGLE NONE 23
5KB C18 C19 SINGLE BEGINWEDGE 24
5KB C20 C19 DOUBLE NONE 25
5KB C20 C21 SINGLE NONE 26
5KB C19 C24 SINGLE NONE 27
5KB C21 C22 DOUBLE NONE 28
5KB C24 C23 DOUBLE NONE 29
5KB C22 C23 SINGLE NONE 30
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
5KB MurckoScaffold S1 scaffold 'c1ccc(C(=C2CCC[C@@H](c3ccccc3)C2)c2ccccc2)cc1' InChI=1S/C25H24/c1-4-11-20(12-5-1)23-17-10-18-24(19-23)25(21-13-6-2-7-14-21)22-15-8-3-9-16-22/h1-9,11-16,23H,10,17-19H2/t23-/m1/s1 NLEJQIPEYVKODO-HSZRJFAPSA-N
5KB cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
5KB phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
5KB C02 S1 1
5KB C03 S1 1
5KB C04 S1 1
5KB C05 S1 1
5KB C06 S1 1
5KB C07 S1 1
5KB C08 S1 1
5KB C09 S1 1
5KB C10 S1 1
5KB C12 S1 1
5KB C13 S1 1
5KB C14 S1 1
5KB C15 S1 1
5KB C16 S1 1
5KB C17 S1 1
5KB C18 S1 1
5KB C19 S1 1
5KB C20 S1 1
5KB C21 S1 1
5KB C22 S1 1
5KB C23 S1 1
5KB C24 S1 1
5KB C25 S1 1
5KB C26 S1 1
5KB C27 S1 1
5KB C14 F1 1
5KB C15 F1 1
5KB C16 F1 1
5KB C17 F1 1
5KB C18 F1 1
5KB C25 F1 1
5KB C02 F2 1
5KB C03 F2 1
5KB C04 F2 1
5KB C05 F2 1
5KB C26 F2 1
5KB C27 F2 1
5KB C07 F2 2
5KB C08 F2 2
5KB C09 F2 2
5KB C10 F2 2
5KB C12 F2 2
5KB C13 F2 2
5KB C19 F2 3
5KB C20 F2 3
5KB C21 F2 3
5KB C22 F2 3
5KB C23 F2 3
5KB C24 F2 3
#
_pdbe_chem_comp_rdkit_properties.comp_id 5KB
_pdbe_chem_comp_rdkit_properties.exactmw 356.178
_pdbe_chem_comp_rdkit_properties.amw 356.465
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 27
_pdbe_chem_comp_rdkit_properties.NumAtoms 51
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.200
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 193.886
_pdbe_chem_comp_rdkit_properties.tpsa 40.460
_pdbe_chem_comp_rdkit_properties.CrippenClogP 5.169
_pdbe_chem_comp_rdkit_properties.CrippenMR 107.869
_pdbe_chem_comp_rdkit_properties.chi0v 13.316
_pdbe_chem_comp_rdkit_properties.chi1v 7.408
_pdbe_chem_comp_rdkit_properties.chi2v 3.329
_pdbe_chem_comp_rdkit_properties.chi3v 3.329
_pdbe_chem_comp_rdkit_properties.chi4v 2.196
_pdbe_chem_comp_rdkit_properties.chi0n 37.316
_pdbe_chem_comp_rdkit_properties.chi1n 19.225
_pdbe_chem_comp_rdkit_properties.chi2n 3.329
_pdbe_chem_comp_rdkit_properties.chi3n 3.329
_pdbe_chem_comp_rdkit_properties.chi4n 2.196
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.000
_pdbe_chem_comp_rdkit_properties.kappa1 4.881
_pdbe_chem_comp_rdkit_properties.kappa2 7.709
_pdbe_chem_comp_rdkit_properties.kappa3 3.900
_pdbe_chem_comp_rdkit_properties.Phi 1.394
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
5KB UniChem ZINC ZINC000584904939
5KB UniChem PubChem 137348369
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
5KB O01 -2.950 5.018 -0.425 ETKDGv3 1
5KB C02 -2.560 3.688 -0.284 ETKDGv3 2
5KB C03 -2.639 2.834 -1.316 ETKDGv3 3
5KB C04 -2.218 1.427 -1.150 ETKDGv3 4
5KB C05 -1.740 0.998 0.031 ETKDGv3 5
5KB C06 -1.332 -0.415 0.206 ETKDGv3 6
5KB C07 -2.393 -1.434 0.041 ETKDGv3 7
5KB C08 -3.452 -1.455 0.869 ETKDGv3 8
5KB C09 -4.526 -2.451 0.678 ETKDGv3 9
5KB C10 -4.461 -3.328 -0.333 ETKDGv3 10
5KB O11 -5.478 -4.263 -0.505 ETKDGv3 11
5KB C12 -3.308 -3.294 -1.262 ETKDGv3 12
5KB C13 -2.331 -2.396 -1.088 ETKDGv3 13
5KB C14 -0.038 -0.750 0.455 ETKDGv3 14
5KB C15 0.393 -2.173 0.764 ETKDGv3 15
5KB C16 1.530 -2.622 -0.169 ETKDGv3 16
5KB C17 2.581 -1.524 -0.461 ETKDGv3 17
5KB C18 2.469 -0.321 0.499 ETKDGv3 18
5KB C19 3.548 0.714 0.237 ETKDGv3 19
5KB C20 3.666 1.329 -0.959 ETKDGv3 20
5KB C21 4.722 2.339 -1.182 ETKDGv3 21
5KB C22 5.569 2.653 -0.195 ETKDGv3 22
5KB C23 5.449 1.991 1.118 ETKDGv3 23
5KB C24 4.495 1.076 1.325 ETKDGv3 24
5KB C25 1.058 0.303 0.427 ETKDGv3 25
5KB C26 -1.671 1.941 1.175 ETKDGv3 26
5KB C27 -2.055 3.214 1.022 ETKDGv3 27
5KB H1 -3.302 5.381 -1.304 ETKDGv3 28
5KB H2 -3.009 3.166 -2.278 ETKDGv3 29
5KB H3 -2.290 0.751 -1.994 ETKDGv3 30
5KB H5 -3.527 -0.748 1.687 ETKDGv3 31
5KB H6 -5.367 -2.466 1.360 ETKDGv3 32
5KB H7 -5.450 -4.935 -1.262 ETKDGv3 33
5KB H8 -3.256 -3.994 -2.086 ETKDGv3 34
5KB H9 -1.495 -2.371 -1.776 ETKDGv3 35
5KB H11 -0.430 -2.914 0.714 ETKDGv3 36
5KB H12 0.755 -2.200 1.814 ETKDGv3 37
5KB H13 2.033 -3.501 0.289 ETKDGv3 38
5KB H14 1.090 -2.965 -1.131 ETKDGv3 39
5KB H15 2.444 -1.177 -1.508 ETKDGv3 40
5KB H16 3.600 -1.963 -0.388 ETKDGv3 41
5KB H17 2.611 -0.711 1.532 ETKDGv3 42
5KB H18 2.992 1.100 -1.774 ETKDGv3 43
5KB H19 4.807 2.824 -2.145 ETKDGv3 44
5KB H20 6.342 3.393 -0.358 ETKDGv3 45
5KB H21 6.135 2.250 1.915 ETKDGv3 46
5KB H22 4.418 0.600 2.295 ETKDGv3 47
5KB H23 0.960 0.885 -0.516 ETKDGv3 48
5KB H24 0.932 0.999 1.283 ETKDGv3 49
5KB H25 -1.318 1.599 2.140 ETKDGv3 50
5KB H26 -2.003 3.899 1.860 ETKDGv3 51
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