Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 5KB

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 51


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O01 O O1 N N N 0 6.471 1.647 0.32
2 C02 C C1 N Y N 0 5.177 1.251 0.191
3 C03 C C2 N Y N 0 4.528 0.645 1.258
4 C04 C C3 N Y N 0 3.216 0.242 1.13
5 C05 C C4 N Y N 0 2.541 0.444 -0.073
6 C06 C C5 N N N 0 1.129 0.012 -0.215
7 C07 C C6 N Y N 0 0.785 -1.428 -0.149
8 C08 C C7 N Y N 0 1.247 -2.303 -1.132
9 C09 C C8 N Y N 0 0.925 -3.642 -1.068
10 C10 C C9 N Y N 0 0.14 -4.12 -0.027
11 O11 O O2 N N N 0 -0.176 -5.439 0.033
12 C12 C C10 N Y N 0 -0.323 -3.251 0.953
13 C13 C C11 N Y N 0 0.001 -1.912 0.898
14 C14 C C12 N N N 0 0.166 0.923 -0.402
15 C15 C C13 N N N 0 0.497 2.398 -0.478
16 C16 C C14 N N N 0 -0.41 3.152 0.5
17 C17 C C15 N N N 0 -1.872 2.817 0.198
18 C18 C C16 R N N 0 -2.123 1.328 0.437
19 C19 C C17 N Y N 0 -3.584 1.023 0.223
20 C20 C C18 N Y N 0 -4.166 1.262 -1.008
21 C21 C C19 N Y N 0 -5.505 0.983 -1.205
22 C22 C C20 N Y N 0 -6.263 0.465 -0.171
23 C23 C C21 N Y N 0 -5.68 0.226 1.06
24 C24 C C22 N Y N 0 -4.34 0.501 1.255
25 C25 C C23 N N N 0 -1.28 0.504 -0.549
26 C26 C C24 N Y N 0 3.195 1.053 -1.143
27 C27 C C25 N Y N 0 4.506 1.458 -1.007
28 H1 H H1 N N N 0 6.574 2.552 0.646
29 H2 H H2 N N N 0 5.052 0.489 2.19
30 H3 H H3 N N N 0 2.711 -0.229 1.96
31 H5 H H5 N N N 0 1.858 -1.932 -1.942
32 H6 H H6 N N N 0 1.283 -4.32 -1.828
33 H7 H H7 N N N 0 0.459 -5.974 0.529
34 H8 H H8 N N N 0 -0.933 -3.626 1.761
35 H9 H H9 N N N 0 -0.355 -1.238 1.663
36 H11 H H11 N N N 0 1.541 2.553 -0.204
37 H12 H H12 N N N 0 0.324 2.76 -1.492
38 H13 H H13 N N N 0 -0.172 2.853 1.52
39 H14 H H14 N N N 0 -0.252 4.224 0.389
40 H15 H H15 N N N 0 -2.52 3.404 0.849
41 H16 H H16 N N N 0 -2.091 3.059 -0.842
42 H17 H H17 N N N 0 -1.845 1.072 1.46
43 H18 H H18 N N N 0 -3.574 1.666 -1.816
44 H19 H H19 N N N 0 -5.96 1.169 -2.167
45 H20 H H20 N N N 0 -7.309 0.248 -0.324
46 H21 H H21 N N N 0 -6.272 -0.178 1.868
47 H22 H H22 N N N 0 -3.884 0.311 2.216
48 H23 H H23 N N N 0 -1.614 0.694 -1.568
49 H24 H H24 N N N 0 -1.379 -0.557 -0.319
50 H25 H H25 N N N 0 2.675 1.211 -2.077
51 H26 H H26 N N N 0 5.013 1.933 -1.834