Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 5DG    

Bonds between two atoms of the molecule

Total Number of Bonds: 56


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 F13 C12 F C sing 1.35 N N
2 C14 C12 C C doub 1.38 N Y
3 C14 C15 C C sing 1.38 N Y
4 C12 C11 C C sing 1.38 N Y
5 C15 C09 C C doub 1.39 N Y
6 C11 C10 C C doub 1.38 N Y
7 C09 C10 C C sing 1.39 N Y
8 C09 N08 C N sing 1.4 N N
9 C06 C05 C C doub 1.38 N Y
10 C06 C07 C C sing 1.39 N Y
11 N08 C07 N C sing 1.4 N N
12 C05 C04 C C sing 1.38 N Y
13 C07 C16 C C doub 1.39 N Y
14 C04 C03 C C doub 1.4 N Y
15 C16 C03 C C sing 1.4 N Y
16 C03 C02 C C sing 1.47 N N
17 C02 C01 C C sing 1.51 N N
18 C02 C17 C C doub 1.36 N N
19 O29 C28 O C sing 1.36 N N
20 C28 C30 C C doub 1.39 N Y
21 C28 C27 C C sing 1.39 N Y
22 C30 C31 C C sing 1.38 N Y
23 C27 C26 C C doub 1.38 N Y
24 C31 C25 C C doub 1.4 N Y
25 C26 C25 C C sing 1.4 N Y
26 C25 C17 C C sing 1.48 N N
27 C17 C18 C C sing 1.48 N N
28 C24 C18 C C doub 1.4 N Y
29 C24 C23 C C sing 1.38 N Y
30 C18 C19 C C sing 1.4 N Y
31 C23 C21 C C doub 1.39 N Y
32 C19 C20 C C doub 1.38 N Y
33 C21 C20 C C sing 1.39 N Y
34 C21 O22 C O sing 1.36 N N
35 C01 H1 C H sing 1.09 N N
36 C01 H2 C H sing 1.09 N N
37 C01 H3 C H sing 1.09 N N
38 C04 H5 C H sing 1.08 N N
39 C05 H6 C H sing 1.08 N N
40 C06 H7 C H sing 1.08 N N
41 N08 H8 N H sing 0.97 N N
42 C10 H9 C H sing 1.08 N N
43 C11 H10 C H sing 1.08 N N
44 C14 H11 C H sing 1.08 N N
45 C15 H12 C H sing 1.08 N N
46 C16 H13 C H sing 1.08 N N
47 C19 H15 C H sing 1.08 N N
48 C20 H16 C H sing 1.08 N N
49 O22 H17 O H sing 0.97 N N
50 C23 H18 C H sing 1.08 N N
51 C24 H19 C H sing 1.08 N N
52 C26 H20 C H sing 1.08 N N
53 C27 H21 C H sing 1.08 N N
54 O29 H22 O H sing 0.97 N N
55 C30 H23 C H sing 1.08 N N
56 C31 H24 C H sing 1.08 N N