Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 5DG

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 53


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C01 C C1 N N N 0 -0.376 1.954 1.329
2 C02 C C2 N N N 0 -0.665 0.535 0.91
3 C03 C C3 N Y N 0 0.308 -0.529 1.196
4 C04 C C4 N Y N 0 -0.01 -1.548 2.101
5 C05 C C5 N Y N 0 0.906 -2.545 2.366
6 C06 C C6 N Y N 0 2.139 -2.542 1.742
7 C07 C C7 N Y N 0 2.467 -1.534 0.842
8 N08 N N1 N N N 0 3.716 -1.537 0.215
9 C09 C C8 N Y N 0 4.338 -0.327 -0.111
10 C10 C C9 N Y N 0 4.081 0.812 0.642
11 C11 C C10 N Y N 0 4.696 2.005 0.319
12 C12 C C11 N Y N 0 5.568 2.067 -0.755
13 F13 F F1 N N N 0 6.168 3.236 -1.07
14 C14 C C12 N Y N 0 5.825 0.934 -1.507
15 C15 C C13 N Y N 0 5.217 -0.264 -1.184
16 C16 C C14 N Y N 0 1.554 -0.53 0.562
17 C17 C C15 N N N 0 -1.824 0.24 0.27
18 C18 C C16 N Y N 0 -2.857 1.283 0.092
19 C19 C C17 N Y N 0 -3.19 1.728 -1.188
20 C20 C C18 N Y N 0 -4.154 2.7 -1.35
21 C21 C C19 N Y N 0 -4.794 3.237 -0.24
22 O22 O O1 N N N 0 -5.743 4.195 -0.403
23 C23 C C20 N Y N 0 -4.466 2.796 1.035
24 C24 C C21 N Y N 0 -3.507 1.821 1.205
25 C25 C C22 N Y N 0 -2.054 -1.125 -0.251
26 C26 C C23 N Y N 0 -3.053 -1.927 0.303
27 C27 C C24 N Y N 0 -3.265 -3.198 -0.186
28 C28 C C25 N Y N 0 -2.485 -3.682 -1.228
29 O29 O O2 N N N 0 -2.693 -4.938 -1.704
30 C30 C C26 N Y N 0 -1.49 -2.888 -1.782
31 C31 C C27 N Y N 0 -1.276 -1.613 -1.303
32 H1 H H1 N N N 0 -0.762 2.122 2.334
33 H2 H H2 N N N 0 0.701 2.122 1.32
34 H3 H H3 N N N 0 -0.857 2.642 0.635
35 H5 H H5 N N N 0 -0.972 -1.554 2.591
36 H10 H H10 N N N 0 4.496 2.891 0.904
37 H6 H H6 N N N 0 0.658 -3.331 3.065
38 H7 H H7 N N N 0 2.852 -3.326 1.956
39 H8 H H8 N N N 0 4.152 -2.378 0.006
40 H9 H H9 N N N 0 3.401 0.764 1.48
41 H11 H H11 N N N 0 6.505 0.984 -2.345
42 H12 H H12 N N N 0 5.418 -1.148 -1.771
43 H13 H H13 N N N 0 1.807 0.253 -0.137
44 H15 H H15 N N N 0 -2.692 1.312 -2.052
45 H16 H H16 N N N 0 -4.411 3.045 -2.34
46 H17 H H17 N N N 0 -6.64 3.846 -0.507
47 H18 H H18 N N N 0 -4.966 3.216 1.896
48 H19 H H19 N N N 0 -3.256 1.476 2.197
49 H20 H H20 N N N 0 -3.659 -1.551 1.114
50 H21 H H21 N N N 0 -4.037 -3.819 0.243
51 H22 H H22 N N N 0 -2.173 -5.619 -1.255
52 H23 H H23 N N N 0 -0.885 -3.268 -2.593
53 H24 H H24 N N N 0 -0.502 -0.996 -1.734