Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : 2XM    

Bonds between two atoms of the molecule

Total Number of Bonds: 61


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 CAO CBE C C sing 1.51 N N
2 CAO CAJ C C sing 1.53 N N
3 SAW CBE S C sing 1.76 N Y
4 SAW CBF S C sing 1.76 N Y
5 CAA CAJ C C sing 1.53 N N
6 CAK OAD C O sing 1.43 N N
7 CAK CAM C C sing 1.53 N N
8 CBE CBD C C doub 1.34 N Y
9 CAF CAG C C doub 1.38 N Y
10 CAF CAZ C C sing 1.4 N Y
11 CAG CBB C C sing 1.39 N Y
12 NAC C4 N C sing 1.39 N N
13 C5 C4 C C doub 1.39 N Y
14 C5 C6 C C sing 1.39 N Y
15 C4 N3 C N sing 1.33 N Y
16 CBF CAZ C C sing 1.48 N N
17 CBF NAS C N doub 1.3 N Y
18 NAB C6 N C sing 1.39 N N
19 C6 N1 C N doub 1.33 N Y
20 CAZ CAI C C doub 1.4 N Y
21 N3 C2 N C doub 1.33 N Y
22 CAM OAT C O sing 1.43 N N
23 N1 C2 N C sing 1.33 N Y
24 C2 SAV C S sing 1.76 N N
25 CBB OAT C O sing 1.36 N N
26 CBB CBC C C doub 1.39 N Y
27 CBD NAS C N sing 1.31 N Y
28 CBD CAP C C sing 1.51 N N
29 SAV CAP S C sing 1.81 N N
30 CAI CBC C C sing 1.38 N Y
31 CBC OAU C O sing 1.36 N N
32 OAU CAN O C sing 1.43 N N
33 CAN CAL C C sing 1.53 N N
34 CAL OAE C O sing 1.43 N N
35 OAE H1 O H sing 0.97 N N
36 CAL H2 C H sing 1.09 N N
37 CAL H3 C H sing 1.09 N N
38 CAN H4 C H sing 1.09 N N
39 CAN H5 C H sing 1.09 N N
40 CAI H6 C H sing 1.08 N N
41 CAM H7 C H sing 1.09 N N
42 CAM H8 C H sing 1.09 N N
43 CAK H9 C H sing 1.09 N N
44 CAK H10 C H sing 1.09 N N
45 OAD H11 O H sing 0.97 N N
46 CAG H12 C H sing 1.08 N N
47 CAF H13 C H sing 1.08 N N
48 CAO H14 C H sing 1.09 N N
49 CAO H15 C H sing 1.09 N N
50 CAJ H16 C H sing 1.09 N N
51 CAJ H17 C H sing 1.09 N N
52 CAA H18 C H sing 1.09 N N
53 CAA H19 C H sing 1.09 N N
54 CAA H20 C H sing 1.09 N N
55 CAP H21 C H sing 1.09 N N
56 CAP H22 C H sing 1.09 N N
57 NAB H23 N H sing 0.97 N N
58 NAB H24 N H sing 0.97 N N
59 C5 H25 C H sing 1.08 N N
60 NAC H26 N H sing 0.97 N N
61 NAC H27 N H sing 0.97 N N