data_2XM
#
_chem_comp.id 2XM
_chem_comp.name
"2,2'-((4-(4-(((4,6-diaminopyrimidin-2-yl)thio)methyl)-5-propylthiazol-2-yl)-1,2-phenylene)bis(oxy))bis(ethan-1-ol)"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H27 N5 O4 S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms
;2,2'-{[4-(4-{[(4,6-diaminopyrimidin-2-yl)sulfanyl]methyl}-5-propyl-1,3-thiazol-2-yl)benzene-1,2-diyl]bis(oxy)}diethanol
;
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2014-04-08
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 477.600
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 2XM
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4Q1C
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2XM OAE OAE O 0 1 N N N N N N -35.142 6.948 -0.330 4.441 -4.382 1.921 OAE 2XM 1
2XM CAL CAL C 0 1 N N N N N N -36.067 7.676 -1.170 3.653 -4.330 0.730 CAL 2XM 2
2XM CAN CAN C 0 1 N N N N N N -35.331 8.847 -1.817 3.106 -2.913 0.541 CAN 2XM 3
2XM OAU OAU O 0 1 N N N N N N -36.275 9.911 -2.035 4.190 -2.010 0.317 OAU 2XM 4
2XM CBC CBC C 0 1 Y N N N N N -35.851 10.887 -2.907 3.874 -0.701 0.129 CBC 2XM 5
2XM CAI CAI C 0 1 Y N N N N N -34.511 11.237 -3.066 2.552 -0.297 0.160 CAI 2XM 6
2XM CBB CBB C 0 1 Y N N N N N -36.836 11.567 -3.607 4.883 0.235 -0.090 CBB 2XM 7
2XM OAT OAT O 0 1 N N N N N N -38.118 11.157 -3.375 6.183 -0.163 -0.116 OAT 2XM 8
2XM CAM CAM C 0 1 N N N N N N -39.169 11.996 -3.794 7.166 0.848 -0.345 CAM 2XM 9
2XM CAK CAK C 0 1 N N N N N N -39.993 11.042 -4.654 8.559 0.216 -0.340 CAK 2XM 10
2XM OAD OAD O 0 1 N N N N N N -40.526 9.990 -3.833 8.678 -0.684 -1.444 OAD 2XM 11
2XM CAG CAG C 0 1 Y N N N N N -36.491 12.584 -4.482 4.564 1.571 -0.281 CAG 2XM 12
2XM CAF CAF C 0 1 Y N N N N N -35.146 12.905 -4.632 3.247 1.979 -0.256 CAF 2XM 13
2XM CAZ CAZ C 0 1 Y N N N N N -34.148 12.235 -3.944 2.232 1.048 -0.032 CAZ 2XM 14
2XM CBF CBF C 0 1 Y N N N N N -32.853 12.586 -4.091 0.819 1.484 -0.005 CBF 2XM 15
2XM NAS NAS N 0 1 Y N N N N N -31.913 12.188 -3.264 -0.207 0.708 0.194 NAS 2XM 16
2XM SAW SAW S 0 1 Y N N N N N -32.193 13.546 -5.221 0.255 3.138 -0.229 SAW 2XM 17
2XM CBE CBE C 0 1 Y N N N N N -30.705 13.460 -4.634 -1.409 2.592 -0.029 CBE 2XM 18
2XM CAO CAO C 0 1 N N N N N N -29.550 14.197 -5.235 -2.637 3.464 -0.083 CAO 2XM 19
2XM CAJ CAJ C 0 1 N N N N N N -29.463 15.362 -4.264 -2.955 3.984 1.319 CAJ 2XM 20
2XM CAA CAA C 0 1 N N N N N N -28.616 16.485 -4.841 -4.202 4.869 1.264 CAA 2XM 21
2XM CBD CBD C 0 1 Y N N N N N -30.700 12.656 -3.560 -1.393 1.273 0.184 CBD 2XM 22
2XM CAP CAP C 0 1 N N N N N N -29.510 12.289 -2.706 -2.658 0.482 0.397 CAP 2XM 23
2XM SAV SAV S 0 1 N N N N N N -28.658 10.741 -3.276 -3.277 -0.108 -1.199 SAV 2XM 24
2XM C2 C2 C 0 1 Y N N N N N -27.005 11.152 -3.636 -4.717 -0.973 -0.668 C2 2XM 25
2XM N3 N3 N 0 1 Y N N N N N -26.136 10.169 -3.936 -5.479 -1.573 -1.571 N3 2XM 26
2XM N1 N1 N 0 1 Y N N N N N -26.626 12.419 -3.648 -5.006 -1.013 0.625 N1 2XM 27
2XM C6 C6 C 0 1 Y N N N N N -25.345 12.741 -3.946 -6.086 -1.657 1.062 C6 2XM 28
2XM NAB NAB N 0 1 N N N N N N -24.983 14.015 -3.966 -6.382 -1.693 2.416 NAB 2XM 29
2XM C5 C5 C 0 1 Y N N N N N -24.421 11.751 -4.228 -6.913 -2.294 0.142 C5 2XM 30
2XM C4 C4 C 0 1 Y N N N N N -24.858 10.435 -4.208 -6.574 -2.236 -1.206 C4 2XM 31
2XM NAC NAC N 0 1 N N N N N N -24.022 9.423 -4.447 -7.369 -2.856 -2.158 NAC 2XM 32
2XM H1 H1 H 0 1 N N N N N N -35.591 6.217 0.077 4.820 -5.252 2.103 H1 2XM 33
2XM H2 H2 H 0 1 N N N N N N -36.900 8.055 -0.560 4.271 -4.597 -0.127 H2 2XM 34
2XM H3 H3 H 0 1 N N N N N N -36.459 7.009 -1.952 2.823 -5.031 0.812 H3 2XM 35
2XM H4 H4 H 0 1 N N N N N N -34.900 8.530 -2.778 2.434 -2.894 -0.316 H4 2XM 36
2XM H5 H5 H 0 1 N N N N N N -34.527 9.194 -1.151 2.562 -2.612 1.436 H5 2XM 37
2XM H6 H6 H 0 1 N N N N N N -33.751 10.722 -2.497 1.770 -1.021 0.333 H6 2XM 38
2XM H7 H7 H 0 1 N N N N N N -38.794 12.846 -4.383 6.984 1.320 -1.311 H7 2XM 39
2XM H8 H8 H 0 1 N N N N N N -39.750 12.370 -2.938 7.105 1.599 0.443 H8 2XM 40
2XM H9 H9 H 0 1 N N N N N N -39.352 10.607 -5.435 9.314 0.998 -0.426 H9 2XM 41
2XM H10 H10 H 0 1 N N N N N N -40.820 11.594 -5.124 8.707 -0.331 0.592 H10 2XM 42
2XM H11 H11 H 0 1 N N N N N N -41.039 9.397 -4.370 9.538 -1.122 -1.503 H11 2XM 43
2XM H12 H12 H 0 1 N N N N N N -37.250 13.116 -5.036 5.349 2.293 -0.450 H12 2XM 44
2XM H13 H13 H 0 1 N N N N N N -34.871 13.702 -5.307 3.001 3.020 -0.405 H13 2XM 45
2XM H14 H14 H 0 1 N N N N N N -28.631 13.592 -5.233 -2.455 4.306 -0.751 H14 2XM 46
2XM H15 H15 H 0 1 N N N N N N -29.766 14.533 -6.260 -3.480 2.881 -0.455 H15 2XM 47
2XM H16 H16 H 0 1 N N N N N N -30.476 15.741 -4.064 -3.137 3.142 1.987 H16 2XM 48
2XM H17 H17 H 0 1 N N N N N N -29.009 15.015 -3.324 -2.112 4.567 1.691 H17 2XM 49
2XM H18 H18 H 0 1 N N N N N N -28.568 17.316 -4.121 -5.045 4.287 0.892 H18 2XM 50
2XM H19 H19 H 0 1 N N N N N N -27.600 16.113 -5.040 -4.429 5.240 2.264 H19 2XM 51
2XM H20 H20 H 0 1 N N N N N N -29.067 16.839 -5.780 -4.020 5.712 0.597 H20 2XM 52
2XM H21 H21 H 0 1 N N N N N N -28.788 13.118 -2.736 -2.450 -0.371 1.043 H21 2XM 53
2XM H22 H22 H 0 1 N N N N N N -29.854 12.140 -1.672 -3.410 1.117 0.866 H22 2XM 54
2XM H23 H23 H 0 1 N N N N N N -25.770 14.589 -3.741 -5.800 -1.246 3.052 H23 2XM 55
2XM H24 H24 H 0 1 N N N N N N -24.258 14.166 -3.294 -7.170 -2.164 2.728 H24 2XM 56
2XM H25 H25 H 0 1 N N N N N N -23.394 11.995 -4.456 -7.796 -2.825 0.468 H25 2XM 57
2XM H26 H26 H 0 1 N N N N N N -24.518 8.557 -4.381 -8.168 -3.334 -1.885 H26 2XM 58
2XM H27 H27 H 0 1 N N N N N N -23.638 9.518 -5.366 -7.127 -2.811 -3.096 H27 2XM 59
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2XM CAO CBE SING N N 1
2XM CAO CAJ SING N N 2
2XM SAW CBE SING Y N 3
2XM SAW CBF SING Y N 4
2XM CAA CAJ SING N N 5
2XM CAK OAD SING N N 6
2XM CAK CAM SING N N 7
2XM CBE CBD DOUB Y N 8
2XM CAF CAG DOUB Y N 9
2XM CAF CAZ SING Y N 10
2XM CAG CBB SING Y N 11
2XM NAC C4 SING N N 12
2XM C5 C4 DOUB Y N 13
2XM C5 C6 SING Y N 14
2XM C4 N3 SING Y N 15
2XM CBF CAZ SING N N 16
2XM CBF NAS DOUB Y N 17
2XM NAB C6 SING N N 18
2XM C6 N1 DOUB Y N 19
2XM CAZ CAI DOUB Y N 20
2XM N3 C2 DOUB Y N 21
2XM CAM OAT SING N N 22
2XM N1 C2 SING Y N 23
2XM C2 SAV SING N N 24
2XM CBB OAT SING N N 25
2XM CBB CBC DOUB Y N 26
2XM CBD NAS SING Y N 27
2XM CBD CAP SING N N 28
2XM SAV CAP SING N N 29
2XM CAI CBC SING Y N 30
2XM CBC OAU SING N N 31
2XM OAU CAN SING N N 32
2XM CAN CAL SING N N 33
2XM CAL OAE SING N N 34
2XM OAE H1 SING N N 35
2XM CAL H2 SING N N 36
2XM CAL H3 SING N N 37
2XM CAN H4 SING N N 38
2XM CAN H5 SING N N 39
2XM CAI H6 SING N N 40
2XM CAM H7 SING N N 41
2XM CAM H8 SING N N 42
2XM CAK H9 SING N N 43
2XM CAK H10 SING N N 44
2XM OAD H11 SING N N 45
2XM CAG H12 SING N N 46
2XM CAF H13 SING N N 47
2XM CAO H14 SING N N 48
2XM CAO H15 SING N N 49
2XM CAJ H16 SING N N 50
2XM CAJ H17 SING N N 51
2XM CAA H18 SING N N 52
2XM CAA H19 SING N N 53
2XM CAA H20 SING N N 54
2XM CAP H21 SING N N 55
2XM CAP H22 SING N N 56
2XM NAB H23 SING N N 57
2XM NAB H24 SING N N 58
2XM C5 H25 SING N N 59
2XM NAC H26 SING N N 60
2XM NAC H27 SING N N 61
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2XM SMILES ACDLabs 12.01 OCCOc3c(OCCO)cc(c1nc(c(s1)CCC)CSc2nc(N)cc(n2)N)cc3
2XM InChI InChI 1.03 InChI=1S/C21H27N5O4S2/c1-2-3-17-14(12-31-21-25-18(22)11-19(23)26-21)24-20(32-17)13-4-5-15(29-8-6-27)16(10-13)30-9-7-28/h4-5,10-11,27-28H,2-3,6-9,12H2,1H3,(H4,22,23,25,26)
2XM InChIKey InChI 1.03 SVAHOUYXRPNIPY-UHFFFAOYSA-N
2XM SMILES_CANONICAL CACTVS 3.385 CCCc1sc(nc1CSc2nc(N)cc(N)n2)c3ccc(OCCO)c(OCCO)c3
2XM SMILES CACTVS 3.385 CCCc1sc(nc1CSc2nc(N)cc(N)n2)c3ccc(OCCO)c(OCCO)c3
2XM SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CCCc1c(nc(s1)c2ccc(c(c2)OCCO)OCCO)CSc3nc(cc(n3)N)N
2XM SMILES "OpenEye OEToolkits" 1.7.6 CCCc1c(nc(s1)c2ccc(c(c2)OCCO)OCCO)CSc3nc(cc(n3)N)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
2XM "SYSTEMATIC NAME" ACDLabs 12.01 "2,2'-{[4-(4-{[(4,6-diaminopyrimidin-2-yl)sulfanyl]methyl}-5-propyl-1,3-thiazol-2-yl)benzene-1,2-diyl]bis(oxy)}diethanol"
2XM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 2-[4-[4-[[4,6-bis(azanyl)pyrimidin-2-yl]sulfanylmethyl]-5-propyl-1,3-thiazol-2-yl]-2-(2-hydroxyethyloxy)phenoxy]ethanol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2XM 'Create component' 2014-04-08 RCSB
2XM 'Modify name' 2014-04-21 RCSB
2XM 'Modify synonyms' 2014-04-21 RCSB
2XM 'Initial release' 2014-11-05 RCSB
2XM 'Other modification' 2020-05-30 RCSB
2XM 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 2XM
_pdbx_chem_comp_synonyms.name
"2,2'-{[4-(4-{[(4,6-diaminopyrimidin-2-yl)sulfanyl]methyl}-5-propyl-1,3-thiazol-2-yl)benzene-1,2-diyl]bis(oxy)}diethanol"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id 2XM
_pdbe_chem_comp_synonyms.name
"2,2'-{[4-(4-{[(4,6-diaminopyrimidin-2-yl)sulfanyl]methyl}-5-propyl-1,3-thiazol-2-yl)benzene-1,2-diyl]bis(oxy)}diethanol"
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
2XM OAE O 4.922 -3.428 1
2XM CAL C 6.221 -4.178 2
2XM CAN C 7.520 -3.428 3
2XM OAU O 8.819 -4.178 4
2XM CBC C 10.118 -3.428 5
2XM CAI C 10.118 -1.927 6
2XM CBB C 11.417 -4.178 7
2XM OAT O 11.417 -5.678 8
2XM CAM C 12.716 -6.428 9
2XM CAK C 12.716 -7.928 10
2XM OAD O 14.015 -8.678 11
2XM CAG C 12.716 -3.428 12
2XM CAF C 12.716 -1.927 13
2XM CAZ C 11.417 -1.177 14
2XM CBF C 11.417 0.323 15
2XM NAS N 10.204 1.204 16
2XM SAW S 12.631 1.204 17
2XM CBE C 12.167 2.631 18
2XM CAO C 13.049 3.844 19
2XM CAJ C 14.540 3.688 20
2XM CAA C 15.422 4.901 21
2XM CBD C 10.667 2.631 22
2XM CAP C 9.785 3.844 23
2XM SAV S 8.293 3.688 24
2XM C2 C 7.412 4.901 25
2XM N3 N 8.022 6.271 26
2XM N1 N 5.920 4.744 27
2XM C6 C 5.038 5.958 28
2XM NAB N 3.547 5.801 29
2XM C5 C 5.649 7.328 30
2XM C4 C 7.140 7.485 31
2XM NAC N 7.750 8.855 32
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
2XM CAO CBE SINGLE NONE 1
2XM CAO CAJ SINGLE NONE 2
2XM SAW CBE SINGLE NONE 3
2XM SAW CBF SINGLE NONE 4
2XM CAA CAJ SINGLE NONE 5
2XM CAK OAD SINGLE NONE 6
2XM CAK CAM SINGLE NONE 7
2XM CBE CBD DOUBLE NONE 8
2XM CAF CAG DOUBLE NONE 9
2XM CAF CAZ SINGLE NONE 10
2XM CAG CBB SINGLE NONE 11
2XM NAC C4 SINGLE NONE 12
2XM C5 C4 SINGLE NONE 13
2XM C5 C6 DOUBLE NONE 14
2XM C4 N3 DOUBLE NONE 15
2XM CBF CAZ SINGLE NONE 16
2XM CBF NAS DOUBLE NONE 17
2XM NAB C6 SINGLE NONE 18
2XM C6 N1 SINGLE NONE 19
2XM CAZ CAI DOUBLE NONE 20
2XM N3 C2 SINGLE NONE 21
2XM CAM OAT SINGLE NONE 22
2XM N1 C2 DOUBLE NONE 23
2XM C2 SAV SINGLE NONE 24
2XM CBB OAT SINGLE NONE 25
2XM CBB CBC DOUBLE NONE 26
2XM CBD NAS SINGLE NONE 27
2XM CBD CAP SINGLE NONE 28
2XM SAV CAP SINGLE NONE 29
2XM CAI CBC SINGLE NONE 30
2XM CBC OAU SINGLE NONE 31
2XM OAU CAN SINGLE NONE 32
2XM CAN CAL SINGLE NONE 33
2XM CAL OAE SINGLE NONE 34
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
2XM MurckoScaffold S1 scaffold c1ccc(-c2nc(CSc3ncccn3)cs2)cc1 InChI=1S/C14H11N3S2/c1-2-5-11(6-3-1)13-17-12(9-18-13)10-19-14-15-7-4-8-16-14/h1-9H,10H2 UOFJARDSEYJTHA-UHFFFAOYSA-N
2XM phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
2XM pyrimidine F2 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
2XM thiazole F3 fragment c1cscn1 InChI=1S/C3H3NS/c1-2-5-3-4-1/h1-3H FZWLAAWBMGSTSO-UHFFFAOYSA-N
2XM Z56755902 F4 fragment OCCOc1ccccc1O InChI=1S/C8H10O3/c9-5-6-11-8-4-2-1-3-7(8)10/h1-4,9-10H,5-6H2 AMCOCUDBDKVWRZ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
2XM CBC S1 1
2XM CAI S1 1
2XM CBB S1 1
2XM CAG S1 1
2XM CAF S1 1
2XM CAZ S1 1
2XM CBF S1 1
2XM NAS S1 1
2XM SAW S1 1
2XM CBE S1 1
2XM CBD S1 1
2XM CAP S1 1
2XM SAV S1 1
2XM C2 S1 1
2XM N3 S1 1
2XM N1 S1 1
2XM C6 S1 1
2XM C5 S1 1
2XM C4 S1 1
2XM CBC F1 1
2XM CBB F1 1
2XM CAG F1 1
2XM CAF F1 1
2XM CAZ F1 1
2XM CAI F1 1
2XM C5 F2 1
2XM C4 F2 1
2XM N3 F2 1
2XM C2 F2 1
2XM N1 F2 1
2XM C6 F2 1
2XM CBE F3 1
2XM CBD F3 1
2XM NAS F3 1
2XM CBF F3 1
2XM SAW F3 1
2XM OAE F4 1
2XM CAL F4 1
2XM CAN F4 1
2XM OAU F4 1
2XM CBC F4 1
2XM CAI F4 1
2XM CAZ F4 1
2XM CAF F4 1
2XM CAG F4 1
2XM CBB F4 1
2XM OAT F4 1
2XM OAD F4 2
2XM CAK F4 2
2XM CAM F4 2
2XM OAT F4 2
2XM CBB F4 2
2XM CAG F4 2
2XM CAF F4 2
2XM CAZ F4 2
2XM CAI F4 2
2XM CBC F4 2
2XM OAU F4 2
#
_pdbe_chem_comp_rdkit_properties.comp_id 2XM
_pdbe_chem_comp_rdkit_properties.exactmw 477.150
_pdbe_chem_comp_rdkit_properties.amw 477.612
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 17
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 11
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 32
_pdbe_chem_comp_rdkit_properties.NumAtoms 59
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.381
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 232.723
_pdbe_chem_comp_rdkit_properties.tpsa 149.630
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.468
_pdbe_chem_comp_rdkit_properties.CrippenMR 122.972
_pdbe_chem_comp_rdkit_properties.chi0v 16.819
_pdbe_chem_comp_rdkit_properties.chi1v 9.463
_pdbe_chem_comp_rdkit_properties.chi2v 4.667
_pdbe_chem_comp_rdkit_properties.chi3v 4.667
_pdbe_chem_comp_rdkit_properties.chi4v 3.406
_pdbe_chem_comp_rdkit_properties.chi0n 42.186
_pdbe_chem_comp_rdkit_properties.chi1n 20.935
_pdbe_chem_comp_rdkit_properties.chi2n 3.018
_pdbe_chem_comp_rdkit_properties.chi3n 3.018
_pdbe_chem_comp_rdkit_properties.chi4n 1.911
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.600
_pdbe_chem_comp_rdkit_properties.kappa1 6.953
_pdbe_chem_comp_rdkit_properties.kappa2 11.860
_pdbe_chem_comp_rdkit_properties.kappa3 6.453
_pdbe_chem_comp_rdkit_properties.Phi 2.577
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
2XM UniChem ZINC ZINC000096283899
2XM UniChem SureChEMBL SCHEMBL12694541
2XM UniChem 'PubChem TPHARMA' 144221606
2XM UniChem BindingDb 50440179
2XM UniChem BRENDA 213349
2XM UniChem PubChem 60202413
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
2XM OAE 6.058 2.948 -2.643 ETKDGv3 1
2XM CAL 4.856 3.642 -2.445 ETKDGv3 2
2XM CAN 3.789 2.713 -1.873 ETKDGv3 3
2XM OAU 4.182 2.268 -0.578 ETKDGv3 4
2XM CBC 3.425 1.398 0.221 ETKDGv3 5
2XM CAI 2.111 0.863 -0.231 ETKDGv3 6
2XM CBB 3.911 1.044 1.423 ETKDGv3 7
2XM OAT 5.153 1.565 1.823 ETKDGv3 8
2XM CAM 5.861 1.198 3.006 ETKDGv3 9
2XM CAK 6.511 -0.175 2.850 ETKDGv3 10
2XM OAD 7.404 -0.156 1.771 ETKDGv3 11
2XM CAG 3.123 0.126 2.288 ETKDGv3 12
2XM CAF 1.944 -0.350 1.876 ETKDGv3 13
2XM CAZ 1.400 0.029 0.550 ETKDGv3 14
2XM CBF 0.093 -0.504 0.103 ETKDGv3 15
2XM NAS -0.437 -0.216 -1.046 ETKDGv3 16
2XM SAW -0.946 -1.597 1.051 ETKDGv3 17
2XM CBE -2.151 -1.611 -0.258 ETKDGv3 18
2XM CAO -3.426 -2.407 -0.198 ETKDGv3 19
2XM CAJ -3.318 -3.730 -0.969 ETKDGv3 20
2XM CAA -2.346 -4.710 -0.312 ETKDGv3 21
2XM CBD -1.713 -0.841 -1.269 ETKDGv3 22
2XM CAP -2.475 -0.566 -2.536 ETKDGv3 23
2XM SAV -2.996 1.183 -2.601 ETKDGv3 24
2XM C2 -4.208 1.021 -1.294 ETKDGv3 25
2XM N3 -5.552 0.622 -1.606 ETKDGv3 26
2XM N1 -3.862 1.239 -0.059 ETKDGv3 27
2XM C6 -4.803 1.077 1.015 ETKDGv3 28
2XM NAB -4.385 1.307 2.361 ETKDGv3 29
2XM C5 -6.059 0.700 0.743 ETKDGv3 30
2XM C4 -6.438 0.464 -0.666 ETKDGv3 31
2XM NAC -7.766 0.062 -0.998 ETKDGv3 32
2XM H1 6.508 2.899 -1.760 ETKDGv3 33
2XM H2 5.009 4.513 -1.767 ETKDGv3 34
2XM H3 4.506 4.031 -3.425 ETKDGv3 35
2XM H4 3.661 1.840 -2.550 ETKDGv3 36
2XM H5 2.829 3.267 -1.801 ETKDGv3 37
2XM H6 1.728 1.152 -1.201 ETKDGv3 38
2XM H7 5.189 1.221 3.891 ETKDGv3 39
2XM H8 6.660 1.949 3.183 ETKDGv3 40
2XM H9 5.732 -0.950 2.681 ETKDGv3 41
2XM H10 7.059 -0.423 3.786 ETKDGv3 42
2XM H11 7.793 -1.068 1.720 ETKDGv3 43
2XM H12 3.485 -0.167 3.263 ETKDGv3 44
2XM H13 1.392 -1.016 2.526 ETKDGv3 45
2XM H14 -4.265 -1.809 -0.610 ETKDGv3 46
2XM H15 -3.679 -2.614 0.864 ETKDGv3 47
2XM H16 -2.997 -3.542 -2.016 ETKDGv3 48
2XM H17 -4.324 -4.202 -1.004 ETKDGv3 49
2XM H18 -1.311 -4.311 -0.344 ETKDGv3 50
2XM H19 -2.638 -4.896 0.744 ETKDGv3 51
2XM H20 -2.367 -5.675 -0.860 ETKDGv3 52
2XM H21 -3.358 -1.225 -2.659 ETKDGv3 53
2XM H22 -1.801 -0.757 -3.397 ETKDGv3 54
2XM H23 -3.400 1.589 2.560 ETKDGv3 55
2XM H24 -5.048 1.193 3.161 ETKDGv3 56
2XM H25 -6.786 0.567 1.535 ETKDGv3 57
2XM H26 -8.034 -0.107 -1.993 ETKDGv3 58
2XM H27 -8.484 -0.069 -0.252 ETKDGv3 59
#