Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 1RZ    

Bonds between two atoms of the molecule

Total Number of Bonds: 42


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O1G PG O P doub 1.48 N N
2 O1A PA O P doub 1.48 N N
3 O2C PG O P sing 1.61 N N
4 PG O3G P O sing 1.61 N N
5 PG O3B P O sing 1.61 N N
6 N4 C4 N C sing 1.38 N N
7 PA O2A P O sing 1.61 N N
8 PA O3A P O sing 1.61 N N
9 PA O5' P O sing 1.61 N N
10 C5 C4 C C sing 1.41 N N
11 C5 C6 C C doub 1.35 N N
12 O3B PB O P sing 1.61 N N
13 O3A PB O P sing 1.61 N N
14 C4 N3 C N doub 1.33 N N
15 C6 N1 C N sing 1.36 N N
16 PB O2B P O doub 1.48 N N
17 PB O1B P O sing 1.61 N N
18 O5' C5' O C sing 1.43 N N
19 N3 C2 N C sing 1.33 N N
20 N1 C2 N C sing 1.35 N N
21 N1 C1' N C sing 1.47 N N
22 C2 O2 C O doub 1.22 N N
23 C5' C4' C C sing 1.53 N N
24 S3' C2' S C sing 1.84 N N
25 S3' C4' S C sing 1.84 N N
26 C2' C1' C C sing 1.55 N N
27 C4' O4' C O sing 1.44 N N
28 C1' O4' C O sing 1.42 N N
29 O3G H1 O H sing 0.97 N N
30 O1B H2 O H sing 0.97 N N
31 O2A H3 O H sing 0.97 N N
32 C5' H4 C H sing 1.09 N N
33 C5' H5 C H sing 1.09 N N
34 C4' H6 C H sing 1.09 N N
35 C2' H7 C H sing 1.09 N N
36 C2' H8 C H sing 1.09 N N
37 C1' H9 C H sing 1.09 N N
38 N4 H10 N H sing 0.97 N N
39 N4 H11 N H sing 0.97 N N
40 C5 H12 C H sing 1.08 N N
41 C6 H13 C H sing 1.08 N N
42 O2C H14 O H sing 0.97 N N