data_1RZ
#
_chem_comp.id 1RZ
_chem_comp.name "Lamivudine Triphosphate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H14 N3 O12 P3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms
;Lamivudine-5'-triphosphate; 3TC Triphosphate;
[[(2R,5S)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-1,3-oxathiolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono
hydrogen phosphate
;
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-05-14
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 469.196
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 1RZ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4K4H
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1RZ O3G O3G O 0 1 N N N N N N -35.430 25.381 8.303 -4.149 -2.618 1.862 O3G 1RZ 1
1RZ PG PG P 0 1 N N N N N N -34.441 24.377 7.748 -4.567 -1.447 0.839 PG 1RZ 2
1RZ O1G O1G O 0 1 N N N N N N -33.714 24.801 6.520 -5.391 -0.443 1.550 O1G 1RZ 3
1RZ PB PB P 0 1 N N N N N N -33.022 23.071 9.883 -2.945 0.681 -0.436 PB 1RZ 4
1RZ O2B O2B O 0 1 N N N N N N -34.325 22.521 10.393 -3.634 1.753 0.317 O2B 1RZ 5
1RZ O1B O1B O 0 1 N N N N N N -32.009 23.591 10.867 -3.485 0.658 -1.953 O1B 1RZ 6
1RZ O3A O3A O 0 1 N N N N N N -32.218 22.032 8.951 -1.359 0.958 -0.435 O3A 1RZ 7
1RZ PA PA P 0 1 N N N N N N -32.512 20.451 8.733 -0.455 2.282 -0.583 PA 1RZ 8
1RZ O1A O1A O 0 1 N N N N N N -31.690 20.033 7.529 -1.016 3.359 0.263 O1A 1RZ 9
1RZ O2A O2A O 0 1 N N N N N N -33.994 20.176 8.740 -0.446 2.757 -2.121 O2A 1RZ 10
1RZ "O5'" "O5'" O 0 1 N N N N N N -31.799 19.857 10.050 1.050 1.960 -0.112 "O5'" 1RZ 11
1RZ "C5'" "C5'" C 0 1 N N N N N N -32.373 19.883 11.344 2.070 2.957 -0.026 "C5'" 1RZ 12
1RZ "C4'" "C4'" C 0 1 N N R N N N -31.765 18.738 12.156 3.373 2.315 0.451 "C4'" 1RZ 13
1RZ "O4'" "O4'" O 0 1 N N N N N N -30.356 18.882 12.170 3.803 1.290 -0.464 "O4'" 1RZ 14
1RZ "S3'" "S3'" S 0 1 N N N N N N -32.172 17.176 11.421 3.105 1.374 2.011 "S3'" 1RZ 15
1RZ "C2'" "C2'" C 0 1 N N N N N N -30.686 16.509 12.059 4.459 0.176 1.652 "C2'" 1RZ 16
1RZ "C1'" "C1'" C 0 1 N N S N N N -29.688 17.641 12.168 4.406 0.141 0.105 "C1'" 1RZ 17
1RZ N1 N1 N 0 1 N N N N N N -28.763 17.567 11.041 3.649 -1.042 -0.312 N1 1RZ 18
1RZ C2 C2 C 0 1 N N N N N N -27.559 17.034 11.248 4.077 -2.269 0.040 C2 1RZ 19
1RZ O2 O2 O 0 1 N N N N N N -27.210 16.623 12.488 5.094 -2.382 0.705 O2 1RZ 20
1RZ N3 N3 N 0 1 N N N N N N -26.653 16.935 10.262 3.408 -3.361 -0.325 N3 1RZ 21
1RZ C4 C4 C 0 1 N N N N N N -26.963 17.331 9.014 2.300 -3.267 -1.048 C4 1RZ 22
1RZ N4 N4 N 0 1 N N N N N N -26.041 17.208 8.037 1.617 -4.402 -1.419 N4 1RZ 23
1RZ C5 C5 C 0 1 N N N N N N -28.233 17.863 8.751 1.825 -1.996 -1.433 C5 1RZ 24
1RZ C6 C6 C 0 1 N N N N N N -29.127 17.962 9.807 2.513 -0.895 -1.049 C6 1RZ 25
1RZ O3B O3B O 0 1 N N N N N N -33.309 24.313 8.894 -3.242 -0.740 0.261 O3B 1RZ 26
1RZ O2C O2C O 0 1 N N N N N N -35.044 22.990 7.679 -5.416 -2.074 -0.377 O2C 1RZ 27
1RZ H1 H1 H 0 1 N N N N N N -35.432 26.159 7.757 -4.899 -3.088 2.250 H1 1RZ 28
1RZ H2 H2 H 0 1 N N N N N N -32.348 23.498 11.750 -3.076 -0.022 -2.506 H2 1RZ 29
1RZ H3 H3 H 0 1 N N N N N N -34.240 19.745 7.930 -0.090 2.099 -2.734 H3 1RZ 30
1RZ H4 H4 H 0 1 N N N N N N -32.152 20.844 11.831 2.224 3.405 -1.008 H4 1RZ 31
1RZ H5 H5 H 0 1 N N N N N N -33.463 19.751 11.271 1.764 3.729 0.681 H5 1RZ 32
1RZ H6 H6 H 0 1 N N N N N N -32.183 18.736 13.174 4.150 3.069 0.580 H6 1RZ 33
1RZ H7 H7 H 0 1 N N N N N N -30.867 16.071 13.052 5.420 0.551 2.004 H7 1RZ 34
1RZ H8 H8 H 0 1 N N N N N N -30.301 15.733 11.381 4.241 -0.804 2.076 H8 1RZ 35
1RZ H9 H9 H 0 1 N N N N N N -29.125 17.519 13.105 5.423 0.054 -0.278 H9 1RZ 36
1RZ H10 H10 H 0 1 N N N N N N -25.140 16.826 8.245 1.946 -5.275 -1.152 H10 1RZ 37
1RZ H11 H11 H 0 1 N N N N N N -26.258 17.498 7.105 0.807 -4.330 -1.947 H11 1RZ 38
1RZ H12 H12 H 0 1 N N N N N N -28.507 18.186 7.757 0.924 -1.903 -2.022 H12 1RZ 39
1RZ H13 H13 H 0 1 N N N N N N -30.118 18.357 9.638 2.169 0.089 -1.332 H13 1RZ 40
1RZ H14 H14 H 0 1 N N N N N N -34.853 22.603 6.833 -4.937 -2.740 -0.888 H14 1RZ 41
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1RZ O1G PG DOUB N N 1
1RZ O1A PA DOUB N N 2
1RZ O2C PG SING N N 3
1RZ PG O3G SING N N 4
1RZ PG O3B SING N N 5
1RZ N4 C4 SING N N 6
1RZ PA O2A SING N N 7
1RZ PA O3A SING N N 8
1RZ PA "O5'" SING N N 9
1RZ C5 C4 SING N N 10
1RZ C5 C6 DOUB N N 11
1RZ O3B PB SING N N 12
1RZ O3A PB SING N N 13
1RZ C4 N3 DOUB N N 14
1RZ C6 N1 SING N N 15
1RZ PB O2B DOUB N N 16
1RZ PB O1B SING N N 17
1RZ "O5'" "C5'" SING N N 18
1RZ N3 C2 SING N N 19
1RZ N1 C2 SING N N 20
1RZ N1 "C1'" SING N N 21
1RZ C2 O2 DOUB N N 22
1RZ "C5'" "C4'" SING N N 23
1RZ "S3'" "C2'" SING N N 24
1RZ "S3'" "C4'" SING N N 25
1RZ "C2'" "C1'" SING N N 26
1RZ "C4'" "O4'" SING N N 27
1RZ "C1'" "O4'" SING N N 28
1RZ O3G H1 SING N N 29
1RZ O1B H2 SING N N 30
1RZ O2A H3 SING N N 31
1RZ "C5'" H4 SING N N 32
1RZ "C5'" H5 SING N N 33
1RZ "C4'" H6 SING N N 34
1RZ "C2'" H7 SING N N 35
1RZ "C2'" H8 SING N N 36
1RZ "C1'" H9 SING N N 37
1RZ N4 H10 SING N N 38
1RZ N4 H11 SING N N 39
1RZ C5 H12 SING N N 40
1RZ C6 H13 SING N N 41
1RZ O2C H14 SING N N 42
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1RZ InChI InChI 1.03 InChI=1S/C8H14N3O12P3S/c9-5-1-2-11(8(12)10-5)6-4-27-7(21-6)3-20-25(16,17)23-26(18,19)22-24(13,14)15/h1-2,6-7H,3-4H2,(H,16,17)(H,18,19)(H2,9,10,12)(H2,13,14,15)/t6-,7+/m0/s1
1RZ InChIKey InChI 1.03 YLEQMGZZMCJKCN-NKWVEPMBSA-N
1RZ SMILES_CANONICAL CACTVS 3.385 NC1=NC(=O)N(C=C1)[C@@H]2CS[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2
1RZ SMILES CACTVS 3.385 NC1=NC(=O)N(C=C1)[CH]2CS[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2
1RZ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 C1[C@H](O[C@H](S1)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)N2C=CC(=NC2=O)N
1RZ SMILES "OpenEye OEToolkits" 1.7.6 C1C(OC(S1)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)N2C=CC(=NC2=O)N
#
_pdbx_chem_comp_identifier.comp_id 1RZ
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 1.7.6
_pdbx_chem_comp_identifier.identifier
"[[(2R,5S)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-1,3-oxathiolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1RZ 'Create component' 2013-05-14 RCSB
1RZ 'Initial release' 2014-07-16 RCSB
1RZ 'Modify name' 2019-07-11 RCSB
1RZ 'Modify synonyms' 2020-06-05 PDBE
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 1RZ "Lamivudine-5'-triphosphate" ? ?
2 1RZ "3TC Triphosphate" ? ?
3 1RZ "[[(2R,5S)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-1,3-oxathiolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" ? ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
1RZ "Lamivudine-5'-triphosphate" wwPDB ?
1RZ '3TC Triphosphate' wwPDB ?
1RZ '[[(2R,5S)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-1,3-oxathiolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate' wwPDB ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
1RZ O3G O 7.959 -6.956 1
1RZ PG P 6.745 -7.838 2
1RZ O1G O 7.627 -9.051 3
1RZ PB P 6.474 -5.254 4
1RZ O2B O 7.844 -5.864 5
1RZ O1B O 5.104 -4.644 6
1RZ O3A O 7.084 -3.884 7
1RZ PA P 6.202 -2.670 8
1RZ O1A O 4.989 -3.552 9
1RZ O2A O 7.416 -1.788 10
1RZ "O5'" O 5.321 -1.456 11
1RZ "C5'" C 5.931 -0.086 12
1RZ "C4'" C 5.049 1.127 13
1RZ "O4'" O 5.513 2.554 14
1RZ "S3'" S 3.549 1.127 15
1RZ "C2'" C 3.086 2.554 16
1RZ "C1'" C 4.299 3.436 17
1RZ N1 N 4.299 4.936 18
1RZ C2 C 5.598 5.686 19
1RZ O2 O 6.897 4.936 20
1RZ N3 N 5.598 7.186 21
1RZ C4 C 4.299 7.936 22
1RZ N4 N 4.299 9.436 23
1RZ C5 C 3.000 7.186 24
1RZ C6 C 3.000 5.686 25
1RZ O3B O 5.864 -6.624 26
1RZ O2C O 5.532 -8.719 27
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
1RZ O1G PG DOUBLE NONE 1
1RZ O1A PA DOUBLE NONE 2
1RZ O2C PG SINGLE NONE 3
1RZ PG O3G SINGLE NONE 4
1RZ PG O3B SINGLE NONE 5
1RZ N4 C4 SINGLE NONE 6
1RZ PA O2A SINGLE BEGINDASH 7
1RZ PA O3A SINGLE NONE 8
1RZ PA "O5'" SINGLE NONE 9
1RZ C5 C4 SINGLE NONE 10
1RZ C5 C6 DOUBLE NONE 11
1RZ O3B PB SINGLE NONE 12
1RZ O3A PB SINGLE NONE 13
1RZ C4 N3 DOUBLE NONE 14
1RZ C6 N1 SINGLE NONE 15
1RZ PB O2B DOUBLE NONE 16
1RZ PB O1B SINGLE BEGINWEDGE 17
1RZ "O5'" "C5'" SINGLE NONE 18
1RZ N3 C2 SINGLE NONE 19
1RZ N1 C2 SINGLE NONE 20
1RZ "C1'" N1 SINGLE BEGINWEDGE 21
1RZ C2 O2 DOUBLE NONE 22
1RZ "C4'" "C5'" SINGLE BEGINWEDGE 23
1RZ "S3'" "C2'" SINGLE NONE 24
1RZ "S3'" "C4'" SINGLE NONE 25
1RZ "C2'" "C1'" SINGLE NONE 26
1RZ "C4'" "O4'" SINGLE NONE 27
1RZ "C1'" "O4'" SINGLE NONE 28
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
1RZ MurckoScaffold S1 scaffold 'O=c1ncccn1[C@@H]1CSCO1' InChI=1S/C7H8N2O2S/c10-7-8-2-1-3-9(7)6-4-12-5-11-6/h1-3,6H,4-5H2/t6-/m0/s1 RSKYNOBRSYJMLD-LURJTMIESA-N
1RZ phosphate F1 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
1RZ pyrimidine F2 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
1RZ "C4'" S1 1
1RZ "O4'" S1 1
1RZ "S3'" S1 1
1RZ "C2'" S1 1
1RZ "C1'" S1 1
1RZ N1 S1 1
1RZ C2 S1 1
1RZ O2 S1 1
1RZ N3 S1 1
1RZ C4 S1 1
1RZ C5 S1 1
1RZ C6 S1 1
1RZ O3G F1 1
1RZ PG F1 1
1RZ O1G F1 1
1RZ O2C F1 1
1RZ O3B F1 1
1RZ O1B F1 2
1RZ PB F1 2
1RZ O2B F1 2
1RZ O3B F1 2
1RZ O3A F1 2
1RZ O3A F1 3
1RZ PA F1 3
1RZ O1A F1 3
1RZ O2A F1 3
1RZ "O5'" F1 3
1RZ C5 F2 1
1RZ C4 F2 1
1RZ N3 F2 1
1RZ C2 F2 1
1RZ N1 F2 1
1RZ C6 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 1RZ
_pdbe_chem_comp_rdkit_properties.exactmw 468.951
_pdbe_chem_comp_rdkit_properties.amw 469.198
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 15
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 13
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 16
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 27
_pdbe_chem_comp_rdkit_properties.NumAtoms 41
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 19
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 174.571
_pdbe_chem_comp_rdkit_properties.tpsa 229.960
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.276
_pdbe_chem_comp_rdkit_properties.CrippenMR 88.378
_pdbe_chem_comp_rdkit_properties.chi0v 15.490
_pdbe_chem_comp_rdkit_properties.chi1v 10.956
_pdbe_chem_comp_rdkit_properties.chi2v 6.080
_pdbe_chem_comp_rdkit_properties.chi3v 6.080
_pdbe_chem_comp_rdkit_properties.chi4v 4.436
_pdbe_chem_comp_rdkit_properties.chi0n 25.991
_pdbe_chem_comp_rdkit_properties.chi1n 12.285
_pdbe_chem_comp_rdkit_properties.chi2n 1.937
_pdbe_chem_comp_rdkit_properties.chi3n 1.937
_pdbe_chem_comp_rdkit_properties.chi4n 1.182
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.600
_pdbe_chem_comp_rdkit_properties.kappa1 9.937
_pdbe_chem_comp_rdkit_properties.kappa2 8.412
_pdbe_chem_comp_rdkit_properties.kappa3 7.384
_pdbe_chem_comp_rdkit_properties.Phi 3.096
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
1RZ UniChem fdasrs RM8Y5KG43V
1RZ UniChem SureChEMBL SCHEMBL12595501
1RZ UniChem 'PubChem TPHARMA' 16862114
1RZ UniChem PubChem 454110
1RZ UniChem Nikkaji J490.520B
1RZ UniChem BindingDb 50138406
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
1RZ O3G -6.953 -0.226 -3.140 ETKDGv3 1
1RZ PG -6.788 -0.225 -1.456 ETKDGv3 2
1RZ O1G -7.619 -1.354 -0.887 ETKDGv3 3
1RZ PB -4.935 -0.181 0.592 ETKDGv3 4
1RZ O2B -5.946 -0.976 1.388 ETKDGv3 5
1RZ O1B -5.131 1.464 0.952 ETKDGv3 6
1RZ O3A -3.384 -0.710 1.057 ETKDGv3 7
1RZ PA -2.238 0.347 0.369 ETKDGv3 8
1RZ O1A -2.269 1.681 1.083 ETKDGv3 9
1RZ O2A -2.553 0.588 -1.278 ETKDGv3 10
1RZ "O5'" -0.682 -0.335 0.514 ETKDGv3 11
1RZ "C5'" -0.441 -0.614 1.874 ETKDGv3 12
1RZ "C4'" 0.963 -1.192 2.034 ETKDGv3 13
1RZ "O4'" 1.909 -0.267 1.548 ETKDGv3 14
1RZ "S3'" 1.091 -2.788 1.156 ETKDGv3 15
1RZ "C2'" 2.589 -2.210 0.352 ETKDGv3 16
1RZ "C1'" 3.040 -0.992 1.135 ETKDGv3 17
1RZ N1 3.917 -0.145 0.314 ETKDGv3 18
1RZ C2 3.406 0.717 -0.723 ETKDGv3 19
1RZ O2 2.169 0.804 -0.948 ETKDGv3 20
1RZ N3 4.322 1.480 -1.514 ETKDGv3 21
1RZ C4 5.607 1.394 -1.333 ETKDGv3 22
1RZ N4 6.488 2.173 -2.143 ETKDGv3 23
1RZ C5 6.161 0.492 -0.299 ETKDGv3 24
1RZ C6 5.345 -0.235 0.470 ETKDGv3 25
1RZ O3B -5.143 -0.462 -1.077 ETKDGv3 26
1RZ O2C -7.350 1.262 -0.868 ETKDGv3 27
1RZ H1 -6.539 -1.077 -3.434 ETKDGv3 28
1RZ H2 -4.865 1.942 0.126 ETKDGv3 29
1RZ H3 -1.805 1.152 -1.598 ETKDGv3 30
1RZ H4 -0.501 0.314 2.486 ETKDGv3 31
1RZ H5 -1.173 -1.358 2.264 ETKDGv3 32
1RZ H6 1.153 -1.370 3.115 ETKDGv3 33
1RZ H7 2.344 -1.945 -0.699 ETKDGv3 34
1RZ H8 3.367 -3.002 0.365 ETKDGv3 35
1RZ H9 3.590 -1.329 2.045 ETKDGv3 36
1RZ H10 6.107 2.811 -2.877 ETKDGv3 37
1RZ H11 7.522 2.115 -2.013 ETKDGv3 38
1RZ H12 7.233 0.416 -0.167 ETKDGv3 39
1RZ H13 5.772 -0.895 1.215 ETKDGv3 40
1RZ H14 -7.778 1.055 0.001 ETKDGv3 41
#