Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : 1HZ    

Bonds between two atoms of the molecule

Total Number of Bonds: 57


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O3' C3' O C sing 1.43 N N
2 N5' C5' N C sing 1.47 N N
3 N5' S N S sing 1.66 N N
4 O2' C2' O C sing 1.43 N N
5 C5' C4' C C sing 1.53 N N
6 C3' C4' C C sing 1.54 N N
7 C3' C2' C C sing 1.55 N N
8 C4' O4' C O sing 1.44 N N
9 O1P S O S doub 1.42 N N
10 C2' C1' C C sing 1.55 N N
11 S C22 S C sing 1.81 N N
12 S O2P S O doub 1.42 N N
13 C22 C21 C C sing 1.53 N N
14 O4' C1' O C sing 1.44 N N
15 C1' N9 C N sing 1.46 N N
16 O14 C14 O C sing 1.36 N N
17 C21 C19 C C sing 1.51 N N
18 N9 C8 N C sing 1.36 N Y
19 N9 C4 N C sing 1.37 N Y
20 C14 C19 C C doub 1.39 N Y
21 C14 C15 C C sing 1.39 N Y
22 C8 N7 C N doub 1.3 N Y
23 C19 C18 C C sing 1.38 N Y
24 N3 C4 N C doub 1.33 N Y
25 N3 C2 N C sing 1.32 N Y
26 O15 C15 O C sing 1.36 N N
27 C4 C5 C C sing 1.41 N Y
28 C15 C16 C C doub 1.38 N Y
29 C18 C17 C C doub 1.38 N Y
30 N7 C5 N C sing 1.36 N Y
31 C2 N1 C N doub 1.32 N Y
32 C5 C6 C C doub 1.4 N Y
33 C16 C17 C C sing 1.38 N Y
34 N1 C6 N C sing 1.33 N Y
35 C6 N6 C N sing 1.38 N N
36 C22 H1 C H sing 1.09 N N
37 C22 H2 C H sing 1.09 N N
38 C21 H3 C H sing 1.09 N N
39 C21 H4 C H sing 1.09 N N
40 C18 H5 C H sing 1.08 N N
41 C17 H6 C H sing 1.08 N N
42 C16 H7 C H sing 1.08 N N
43 O15 H8 O H sing 0.97 N N
44 O14 H9 O H sing 0.97 N N
45 N5' H10 N H sing 0.97 N N
46 C5' H11 C H sing 1.09 N N
47 C5' H12 C H sing 1.09 N N
48 C4' H13 C H sing 1.09 N N
49 C1' H14 C H sing 1.09 N N
50 C2' H15 C H sing 1.09 N N
51 O2' H16 O H sing 0.97 N N
52 C3' H17 C H sing 1.09 N N
53 O3' H18 O H sing 0.97 N N
54 C8 H19 C H sing 1.08 N N
55 N6 H20 N H sing 0.97 N N
56 N6 H21 N H sing 0.97 N N
57 C2 H22 C H sing 1.08 N N