Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 1DS    

Bonds between two atoms of the molecule

Total Number of Bonds: 75


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O6 C6 O C sing 1.43 N N
2 C6 C5 C C sing 1.53 N N
3 O2 C2 O C sing 1.43 N N
4 C5 O5 C O sing 1.43 N N
5 C5 C4 C C sing 1.53 N N
6 O5 C1 O C sing 1.43 N N
7 O4 C4 O C sing 1.43 N N
8 C2 C1 C C sing 1.53 N N
9 C2 C3 C C sing 1.53 N N
10 C4 C3 C C sing 1.53 N N
11 C1 O1 C O sing 1.43 N N
12 O3 C3 O C sing 1.43 N N
13 O1 C2' O C sing 1.43 N N
14 O2' C2' O C sing 1.44 N N
15 O2' C5' O C sing 1.45 N N
16 C2' C1' C C sing 1.53 N N
17 C2' C3' C C sing 1.54 N N
18 C1' O1' C O sing 1.45 N N
19 C6' C5' C C sing 1.53 N N
20 C6' O6' C O sing 1.43 N N
21 C5' C4' C C sing 1.55 N N
22 O3' C3' O C sing 1.43 N N
23 C3' C4' C C sing 1.55 N N
24 O1' C1N O C sing 1.34 N N
25 C4' O4' C O sing 1.43 N N
26 O1N C1N O C doub 1.21 N N
27 C1N C2N C C sing 1.51 N N
28 C2N C3N C C sing 1.53 N N
29 C3N C4N C C sing 1.53 N N
30 C4N C5N C C sing 1.53 N N
31 O6 H1 O H sing 0.97 N N
32 C6 H2 C H sing 1.09 N N
33 C6 H3 C H sing 1.09 N N
34 C5 H4 C H sing 1.09 N N
35 C4 H5 C H sing 1.09 N N
36 C3 H6 C H sing 1.09 N N
37 C2 H7 C H sing 1.09 N N
38 C1 H8 C H sing 1.09 N N
39 C3' H9 C H sing 1.09 N N
40 C4' H10 C H sing 1.09 N N
41 C5' H11 C H sing 1.09 N N
42 C6' H12 C H sing 1.09 N N
43 C6' H13 C H sing 1.09 N N
44 O6' H14 O H sing 0.97 N N
45 O4' H15 O H sing 0.97 N N
46 O3' H16 O H sing 0.97 N N
47 C1' H17 C H sing 1.09 N N
48 C1' H18 C H sing 1.09 N N
49 O2 H19 O H sing 0.97 N N
50 O3 H20 O H sing 0.97 N N
51 O4 H21 O H sing 0.97 N N
52 C2N H22 C H sing 1.09 N N
53 C2N H23 C H sing 1.09 N N
54 C3N H24 C H sing 1.09 N N
55 C3N H25 C H sing 1.09 N N
56 C4N H26 C H sing 1.09 N N
57 C4N H27 C H sing 1.09 N N
58 C5N H28 C H sing 1.09 N N
59 C5N H29 C H sing 1.09 N N
60 C5N C7 C C sing 1.53 N N
61 C7 C8 C C sing 1.53 N N
62 C8 C9 C C sing 1.53 N N
63 C9 C10 C C sing 1.53 N N
64 C10 C11 C C sing 1.53 N N
65 C7 H30 C H sing 1.09 N N
66 C7 H31 C H sing 1.09 N N
67 C8 H32 C H sing 1.09 N N
68 C8 H33 C H sing 1.09 N N
69 C9 H34 C H sing 1.09 N N
70 C9 H35 C H sing 1.09 N N
71 C10 H36 C H sing 1.09 N N
72 C10 H37 C H sing 1.09 N N
73 C11 H38 C H sing 1.09 N N
74 C11 H39 C H sing 1.09 N N
75 C11 H40 C H sing 1.09 N N