data_1DS
#
_chem_comp.id 1DS
_chem_comp.name "1-O-decanoyl-beta-D-tagatofuranosyl beta-D-allopyranoside"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C22 H40 O12"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-11-16
_chem_comp.pdbx_modified_date 2013-06-21
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 496.546
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 1DS
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4HYT
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1DS O6 O6 O 0 1 N N N N N N -39.997 49.013 -81.871 -3.980 0.037 3.305 O6 1DS 1
1DS C6 C6 C 0 1 N N N N N N -39.825 50.259 -81.258 -4.117 -1.315 2.863 C6 1DS 2
1DS C5 C5 C 0 1 N N R N N N -38.474 50.370 -80.567 -4.265 -1.342 1.341 C5 1DS 3
1DS C4 C4 C 0 1 N N S N N N -38.213 49.346 -79.469 -4.546 -2.774 0.880 C4 1DS 4
1DS C3 C3 C 0 1 N N R N N N -36.781 49.441 -79.066 -4.633 -2.803 -0.649 C3 1DS 5
1DS C2 C2 C 0 1 N N R N N N -36.067 50.657 -79.701 -3.330 -2.249 -1.234 C2 1DS 6
1DS C1 C1 C 0 1 N N S N N N -36.949 51.826 -79.350 -3.096 -0.837 -0.692 C1 1DS 7
1DS O5 O5 O 0 1 N N N N N N -38.181 51.669 -80.044 -3.056 -0.877 0.736 O5 1DS 8
1DS O1 O1 O 0 1 N N N N N N -36.982 51.865 -77.897 -1.854 -0.335 -1.189 O1 1DS 9
1DS "C2'" "C2'" C 0 1 N N S N N N -37.146 53.014 -76.996 -1.651 1.059 -0.946 "C2'" 1DS 10
1DS "C3'" "C3'" C 0 1 N N S N N N -36.459 53.052 -75.643 -2.674 1.885 -1.750 "C3'" 1DS 11
1DS "C4'" "C4'" C 0 1 N N R N N N -36.425 54.398 -75.181 -3.436 2.696 -0.674 "C4'" 1DS 12
1DS "C5'" "C5'" C 0 1 N N R N N N -36.035 55.048 -76.446 -2.443 2.671 0.516 "C5'" 1DS 13
1DS "O2'" "O2'" O 0 1 N N N N N N -36.582 54.215 -77.539 -1.863 1.348 0.446 "O2'" 1DS 14
1DS "C6'" "C6'" C 0 1 N N N N N N -34.596 55.459 -76.581 -3.184 2.869 1.839 "C6'" 1DS 15
1DS "O6'" "O6'" O 0 1 N N N N N N -33.683 54.431 -76.361 -2.237 2.958 2.906 "O6'" 1DS 16
1DS "O4'" "O4'" O 0 1 N N N N N N -35.561 54.624 -74.036 -4.665 2.054 -0.327 "O4'" 1DS 17
1DS "O3'" "O3'" O 0 1 N N N N N N -35.077 52.728 -75.711 -3.569 1.023 -2.455 "O3'" 1DS 18
1DS "C1'" "C1'" C 0 1 N N N N N N -38.619 53.088 -76.852 -0.229 1.455 -1.349 "C1'" 1DS 19
1DS "O1'" "O1'" O 0 1 N N N N N N -39.011 53.051 -75.484 0.724 0.606 -0.659 "O1'" 1DS 20
1DS O2 O2 O 0 1 N N N N N N -35.706 50.715 -81.065 -3.427 -2.204 -2.659 O2 1DS 21
1DS O3 O3 O 0 1 N N N N N N -36.122 48.208 -79.119 -5.732 -1.999 -1.080 O3 1DS 22
1DS O4 O4 O 0 1 N N N N N N -38.541 48.020 -79.780 -5.783 -3.221 1.437 O4 1DS 23
1DS C1N C1N C 0 1 N N N N N N -39.885 52.134 -74.857 2.026 0.890 -0.825 C1N 1DS 24
1DS C2N C2N C 0 1 N N N N N N -40.722 52.806 -73.707 3.076 -0.014 -0.233 C2N 1DS 25
1DS O1N O1N O 0 1 N N N N N N -39.784 50.886 -75.066 2.355 1.872 -1.448 O1N 1DS 26
1DS C3N C3N C 0 1 N N N N N N -40.804 52.087 -72.389 4.460 0.598 -0.456 C3N 1DS 27
1DS C4N C4N C 0 1 N N N N N N -40.560 53.116 -71.227 5.534 -0.376 0.035 C4N 1DS 28
1DS C5N C5N C 0 1 N N N N N N -41.075 52.682 -69.868 6.918 0.236 -0.189 C5N 1DS 29
1DS H1 H1 H 0 1 N N N N N N -40.849 48.981 -82.291 -3.958 0.137 4.267 H1 1DS 30
1DS H2 H2 H 0 1 N N N N N N -39.898 51.045 -82.024 -3.233 -1.883 3.153 H2 1DS 31
1DS H3 H3 H 0 1 N N N N N N -40.619 50.400 -80.510 -5.000 -1.759 3.322 H3 1DS 32
1DS H4 H4 H 0 1 N N N N N N -37.724 50.167 -81.346 -5.091 -0.696 1.044 H4 1DS 33
1DS H5 H5 H 0 1 N N N N N N -38.814 49.654 -78.601 -3.739 -3.428 1.211 H5 1DS 34
1DS H6 H6 H 0 1 N N N N N N -36.821 49.696 -77.997 -4.777 -3.829 -0.987 H6 1DS 35
1DS H7 H7 H 0 1 N N N N N N -35.143 50.791 -79.119 -2.498 -2.892 -0.945 H7 1DS 36
1DS H8 H8 H 0 1 N N N N N N -36.453 52.739 -79.710 -3.907 -0.184 -1.015 H8 1DS 37
1DS H9 H9 H 0 1 N N N N N N -36.989 52.399 -74.934 -2.163 2.555 -2.442 H9 1DS 38
1DS H10 H10 H 0 1 N N N N N N -37.445 54.718 -74.924 -3.615 3.717 -1.011 H10 1DS 39
1DS H11 H11 H 0 1 N N N N N N -36.607 55.987 -76.481 -1.674 3.432 0.390 H11 1DS 40
1DS H12 H12 H 0 1 N N N N N N -34.442 55.844 -77.600 -3.768 3.788 1.795 H12 1DS 41
1DS H13 H13 H 0 1 N N N N N N -34.396 56.259 -75.853 -3.849 2.024 2.014 H13 1DS 42
1DS H14 H14 H 0 1 N N N N N N -32.799 54.764 -76.463 -2.637 3.085 3.777 H14 1DS 43
1DS H15 H15 H 0 1 N N N N N N -35.906 54.161 -73.282 -5.178 2.524 0.343 H15 1DS 44
1DS H16 H16 H 0 1 N N N N N N -34.699 52.767 -74.840 -4.235 1.491 -2.978 H16 1DS 45
1DS H17 H17 H 0 1 N N N N N N -38.975 54.027 -77.301 -0.110 1.335 -2.426 H17 1DS 46
1DS H18 H18 H 0 1 N N N N N N -39.073 52.235 -77.377 -0.052 2.496 -1.078 H18 1DS 47
1DS H19 H19 H 0 1 N N N N N N -35.150 49.975 -81.278 -2.638 -1.857 -3.096 H19 1DS 48
1DS H20 H20 H 0 1 N N N N N N -36.657 47.544 -78.699 -5.847 -1.972 -2.040 H20 1DS 49
1DS H21 H21 H 0 1 N N N N N N -38.343 47.462 -79.037 -6.024 -4.123 1.186 H21 1DS 50
1DS H22 H22 H 0 1 N N N N N N -40.281 53.795 -73.515 2.897 -0.128 0.836 H22 1DS 51
1DS H23 H23 H 0 1 N N N N N N -41.750 52.929 -74.078 3.028 -0.990 -0.716 H23 1DS 52
1DS H24 H24 H 0 1 N N N N N N -41.800 51.635 -72.277 4.605 0.792 -1.519 H24 1DS 53
1DS H25 H25 H 0 1 N N N N N N -40.037 51.299 -72.351 4.538 1.533 0.098 H25 1DS 54
1DS H26 H26 H 0 1 N N N N N N -39.476 53.285 -71.143 5.389 -0.570 1.097 H26 1DS 55
1DS H27 H27 H 0 1 N N N N N N -41.059 54.059 -71.496 5.456 -1.311 -0.519 H27 1DS 56
1DS H28 H28 H 0 1 N N N N N N -41.327 53.629 -69.368 7.062 0.431 -1.251 H28 1DS 57
1DS H29 H29 H 0 1 N N N N N N -41.999 52.133 -70.101 6.995 1.172 0.366 H29 1DS 58
1DS C7 C7 C 0 1 N N N N N N ? ? ? 7.991 -0.737 0.303 C7 1DS 59
1DS C8 C8 C 0 1 N N N N N N ? ? ? 9.376 -0.125 0.079 C8 1DS 60
1DS C9 C9 C 0 1 N N N N N N ? ? ? 10.449 -1.099 0.570 C9 1DS 61
1DS C10 C10 C 0 1 N N N N N N ? ? ? 11.833 -0.487 0.347 C10 1DS 62
1DS C11 C11 C 0 1 N N N N N N ? ? ? 12.906 -1.460 0.838 C11 1DS 63
1DS H30 H30 H 0 1 N N N N N N ? ? ? 7.847 -0.931 1.365 H30 1DS 64
1DS H31 H31 H 0 1 N N N N N N ? ? ? 7.914 -1.673 -0.252 H31 1DS 65
1DS H32 H32 H 0 1 N N N N N N ? ? ? 9.520 0.069 -0.983 H32 1DS 66
1DS H33 H33 H 0 1 N N N N N N ? ? ? 9.453 0.810 0.633 H33 1DS 67
1DS H34 H34 H 0 1 N N N N N N ? ? ? 10.304 -1.293 1.633 H34 1DS 68
1DS H35 H35 H 0 1 N N N N N N ? ? ? 10.372 -2.034 0.016 H35 1DS 69
1DS H36 H36 H 0 1 N N N N N N ? ? ? 11.978 -0.292 -0.715 H36 1DS 70
1DS H37 H37 H 0 1 N N N N N N ? ? ? 11.910 0.449 0.901 H37 1DS 71
1DS H38 H38 H 0 1 N N N N N N ? ? ? 13.893 -1.024 0.679 H38 1DS 72
1DS H39 H39 H 0 1 N N N N N N ? ? ? 12.762 -1.654 1.901 H39 1DS 73
1DS H40 H40 H 0 1 N N N N N N ? ? ? 12.829 -2.396 0.284 H40 1DS 74
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1DS O6 C6 SING N N 1
1DS C6 C5 SING N N 2
1DS O2 C2 SING N N 3
1DS C5 O5 SING N N 4
1DS C5 C4 SING N N 5
1DS O5 C1 SING N N 6
1DS O4 C4 SING N N 7
1DS C2 C1 SING N N 8
1DS C2 C3 SING N N 9
1DS C4 C3 SING N N 10
1DS C1 O1 SING N N 11
1DS O3 C3 SING N N 12
1DS O1 "C2'" SING N N 13
1DS "O2'" "C2'" SING N N 14
1DS "O2'" "C5'" SING N N 15
1DS "C2'" "C1'" SING N N 16
1DS "C2'" "C3'" SING N N 17
1DS "C1'" "O1'" SING N N 18
1DS "C6'" "C5'" SING N N 19
1DS "C6'" "O6'" SING N N 20
1DS "C5'" "C4'" SING N N 21
1DS "O3'" "C3'" SING N N 22
1DS "C3'" "C4'" SING N N 23
1DS "O1'" C1N SING N N 24
1DS "C4'" "O4'" SING N N 25
1DS O1N C1N DOUB N N 26
1DS C1N C2N SING N N 27
1DS C2N C3N SING N N 28
1DS C3N C4N SING N N 29
1DS C4N C5N SING N N 30
1DS O6 H1 SING N N 31
1DS C6 H2 SING N N 32
1DS C6 H3 SING N N 33
1DS C5 H4 SING N N 34
1DS C4 H5 SING N N 35
1DS C3 H6 SING N N 36
1DS C2 H7 SING N N 37
1DS C1 H8 SING N N 38
1DS "C3'" H9 SING N N 39
1DS "C4'" H10 SING N N 40
1DS "C5'" H11 SING N N 41
1DS "C6'" H12 SING N N 42
1DS "C6'" H13 SING N N 43
1DS "O6'" H14 SING N N 44
1DS "O4'" H15 SING N N 45
1DS "O3'" H16 SING N N 46
1DS "C1'" H17 SING N N 47
1DS "C1'" H18 SING N N 48
1DS O2 H19 SING N N 49
1DS O3 H20 SING N N 50
1DS O4 H21 SING N N 51
1DS C2N H22 SING N N 52
1DS C2N H23 SING N N 53
1DS C3N H24 SING N N 54
1DS C3N H25 SING N N 55
1DS C4N H26 SING N N 56
1DS C4N H27 SING N N 57
1DS C5N H28 SING N N 58
1DS C5N H29 SING N N 59
1DS C5N C7 SING N N 60
1DS C7 C8 SING N N 61
1DS C8 C9 SING N N 62
1DS C9 C10 SING N N 63
1DS C10 C11 SING N N 64
1DS C7 H30 SING N N 65
1DS C7 H31 SING N N 66
1DS C8 H32 SING N N 67
1DS C8 H33 SING N N 68
1DS C9 H34 SING N N 69
1DS C9 H35 SING N N 70
1DS C10 H36 SING N N 71
1DS C10 H37 SING N N 72
1DS C11 H38 SING N N 73
1DS C11 H39 SING N N 74
1DS C11 H40 SING N N 75
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1DS SMILES ACDLabs 12.01 O=C(OCC2(OC1OC(CO)C(O)C(O)C1O)OC(C(O)C2O)CO)CCCCCCCCC
1DS InChI InChI 1.03 InChI=1S/C22H40O12/c1-2-3-4-5-6-7-8-9-15(25)31-12-22(20(30)17(27)14(11-24)33-22)34-21-19(29)18(28)16(26)13(10-23)32-21/h13-14,16-21,23-24,26-30H,2-12H2,1H3/t13-,14-,16-,17+,18-,19-,20+,21+,22+/m1/s1
1DS InChIKey InChI 1.03 DSDLUVQAJPJFTK-AJFJJNJGSA-N
1DS SMILES_CANONICAL CACTVS 3.370 CCCCCCCCCC(=O)OC[C@]1(O[C@H](CO)[C@H](O)[C@@H]1O)O[C@@H]2O[C@H](CO)[C@@H](O)[C@@H](O)[C@H]2O
1DS SMILES CACTVS 3.370 CCCCCCCCCC(=O)OC[C]1(O[CH](CO)[CH](O)[CH]1O)O[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O
1DS SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CCCCCCCCCC(=O)OC[C@@]1([C@H]([C@H]([C@H](O1)CO)O)O)O[C@H]2[C@@H]([C@@H]([C@@H]([C@H](O2)CO)O)O)O
1DS SMILES "OpenEye OEToolkits" 1.7.6 CCCCCCCCCC(=O)OCC1(C(C(C(O1)CO)O)O)OC2C(C(C(C(O2)CO)O)O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
1DS "SYSTEMATIC NAME" ACDLabs 12.01 "1-O-decanoyl-beta-D-tagatofuranosyl beta-D-allopyranoside"
1DS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2S,3S,4R,5R)-5-(hydroxymethyl)-2-[(2S,3R,4R,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,4-bis(oxidanyl)oxolan-2-yl]methyl decanoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1DS 'Create component' 2012-11-16 RCSB
1DS 'Initial release' 2013-06-26 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
1DS O6 O 3.805 -1.154 1
1DS C6 C 5.104 -0.404 2
1DS C5 C 6.404 -1.154 3
1DS C4 C 6.404 -2.654 4
1DS C3 C 7.702 -3.404 5
1DS C2 C 9.002 -2.654 6
1DS C1 C 9.002 -1.154 7
1DS O5 O 7.702 -0.404 8
1DS O1 O 10.301 -0.404 9
1DS "C2'" C 10.301 1.096 10
1DS "C3'" C 10.764 2.522 11
1DS "C4'" C 9.551 3.404 12
1DS "C5'" C 8.337 2.522 13
1DS "O2'" O 8.801 1.096 14
1DS "C6'" C 6.910 2.986 15
1DS "O6'" O 6.599 4.453 16
1DS "O4'" O 9.551 4.904 17
1DS "O3'" O 12.191 2.986 18
1DS "C1'" C 11.727 0.632 19
1DS "O1'" O 12.842 1.636 20
1DS O2 O 10.301 -3.404 21
1DS O3 O 7.702 -4.904 22
1DS O4 O 5.104 -3.404 23
1DS C1N C 14.268 1.173 24
1DS C2N C 15.383 2.176 25
1DS O1N O 14.580 -0.295 26
1DS C3N C 16.810 1.713 27
1DS C4N C 17.924 2.716 28
1DS C5N C 19.351 2.253 29
1DS C7 C 20.466 3.256 30
1DS C8 C 21.892 2.793 31
1DS C9 C 23.007 3.797 32
1DS C10 C 24.434 3.333 33
1DS C11 C 25.548 4.337 34
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
1DS O6 C6 SINGLE NONE 1
1DS C5 C6 SINGLE BEGINWEDGE 2
1DS C2 O2 SINGLE BEGINDASH 3
1DS C5 O5 SINGLE NONE 4
1DS C5 C4 SINGLE NONE 5
1DS O5 C1 SINGLE NONE 6
1DS C4 O4 SINGLE BEGINDASH 7
1DS C2 C1 SINGLE NONE 8
1DS C2 C3 SINGLE NONE 9
1DS C4 C3 SINGLE NONE 10
1DS C1 O1 SINGLE BEGINWEDGE 11
1DS C3 O3 SINGLE BEGINDASH 12
1DS O1 "C2'" SINGLE NONE 13
1DS "O2'" "C2'" SINGLE NONE 14
1DS "O2'" "C5'" SINGLE NONE 15
1DS "C2'" "C1'" SINGLE BEGINWEDGE 16
1DS "C2'" "C3'" SINGLE NONE 17
1DS "C1'" "O1'" SINGLE NONE 18
1DS "C5'" "C6'" SINGLE BEGINDASH 19
1DS "C6'" "O6'" SINGLE NONE 20
1DS "C5'" "C4'" SINGLE NONE 21
1DS "C3'" "O3'" SINGLE BEGINDASH 22
1DS "C3'" "C4'" SINGLE NONE 23
1DS "O1'" C1N SINGLE NONE 24
1DS "C4'" "O4'" SINGLE BEGINDASH 25
1DS O1N C1N DOUBLE NONE 26
1DS C1N C2N SINGLE NONE 27
1DS C2N C3N SINGLE NONE 28
1DS C3N C4N SINGLE NONE 29
1DS C4N C5N SINGLE NONE 30
1DS C5N C7 SINGLE NONE 31
1DS C7 C8 SINGLE NONE 32
1DS C8 C9 SINGLE NONE 33
1DS C9 C10 SINGLE NONE 34
1DS C10 C11 SINGLE NONE 35
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
1DS MurckoScaffold S1 scaffold 'C1CC[C@H](OC2CCCO2)OC1' InChI=1S/C9H16O3/c1-2-6-10-8(4-1)12-9-5-3-7-11-9/h8-9H,1-7H2/t8-,9-/m0/s1 MBOJVEMNLCGPFY-IUCAKERBSA-N
1DS furanose F1 fragment OC1CCCO1 InChI=1S/C4H8O2/c5-4-2-1-3-6-4/h4-5H,1-3H2 JNODDICFTDYODH-UHFFFAOYSA-N
1DS pyranose F2 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
1DS ribose F3 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
1DS C5 S1 1
1DS C4 S1 1
1DS C3 S1 1
1DS C2 S1 1
1DS C1 S1 1
1DS O5 S1 1
1DS O1 S1 1
1DS "C2'" S1 1
1DS "C3'" S1 1
1DS "C4'" S1 1
1DS "C5'" S1 1
1DS "O2'" S1 1
1DS "C4'" F1 1
1DS "C5'" F1 1
1DS "O2'" F1 1
1DS "C2'" F1 1
1DS "C3'" F1 1
1DS O1 F1 1
1DS C4 F2 1
1DS C5 F2 1
1DS O5 F2 1
1DS C1 F2 1
1DS C2 F2 1
1DS C3 F2 1
1DS O1 F2 1
1DS "C3'" F3 1
1DS "C4'" F3 1
1DS "C5'" F3 1
1DS "O2'" F3 1
1DS "C2'" F3 1
1DS "C6'" F3 1
1DS "O6'" F3 1
1DS "O4'" F3 1
1DS "O3'" F3 1
1DS "C4'" F3 2
1DS "C3'" F3 2
1DS "C2'" F3 2
1DS "O2'" F3 2
1DS "C5'" F3 2
1DS "C1'" F3 2
1DS "O1'" F3 2
1DS "O3'" F3 2
1DS "O4'" F3 2
#
_pdbe_chem_comp_rdkit_properties.comp_id 1DS
_pdbe_chem_comp_rdkit_properties.exactmw 496.252
_pdbe_chem_comp_rdkit_properties.amw 496.550
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 12
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 22
_pdbe_chem_comp_rdkit_properties.NumHBD 7
_pdbe_chem_comp_rdkit_properties.NumHBA 12
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 34
_pdbe_chem_comp_rdkit_properties.NumAtoms 74
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.955
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 9
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 255.372
_pdbe_chem_comp_rdkit_properties.tpsa 195.600
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.704
_pdbe_chem_comp_rdkit_properties.CrippenMR 115.125
_pdbe_chem_comp_rdkit_properties.chi0v 15.899
_pdbe_chem_comp_rdkit_properties.chi1v 8.016
_pdbe_chem_comp_rdkit_properties.chi2v 3.195
_pdbe_chem_comp_rdkit_properties.chi3v 3.195
_pdbe_chem_comp_rdkit_properties.chi4v 1.838
_pdbe_chem_comp_rdkit_properties.chi0n 55.899
_pdbe_chem_comp_rdkit_properties.chi1n 27.374
_pdbe_chem_comp_rdkit_properties.chi2n 3.195
_pdbe_chem_comp_rdkit_properties.chi3n 3.195
_pdbe_chem_comp_rdkit_properties.chi4n 1.838
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.930
_pdbe_chem_comp_rdkit_properties.kappa1 6.199
_pdbe_chem_comp_rdkit_properties.kappa2 13.973
_pdbe_chem_comp_rdkit_properties.kappa3 7.292
_pdbe_chem_comp_rdkit_properties.Phi 2.548
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
1DS UniChem ZINC ZINC000098207954
1DS UniChem PubChem 137347953
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
1DS O6 -2.639 -4.545 0.619 ETKDGv3 1
1DS C6 -2.085 -3.425 -0.020 ETKDGv3 2
1DS C5 -3.176 -2.410 -0.392 ETKDGv3 3
1DS C4 -4.185 -3.012 -1.426 ETKDGv3 4
1DS C3 -4.000 -2.348 -2.804 ETKDGv3 5
1DS C2 -4.080 -0.808 -2.699 ETKDGv3 6
1DS C1 -3.487 -0.310 -1.357 ETKDGv3 7
1DS O5 -2.533 -1.243 -0.884 ETKDGv3 8
1DS O1 -2.831 0.928 -1.586 ETKDGv3 9
1DS "C2'" -2.979 1.864 -0.520 ETKDGv3 10
1DS "C3'" -2.274 3.177 -0.919 ETKDGv3 11
1DS "C4'" -3.188 4.229 -0.342 ETKDGv3 12
1DS "C5'" -4.553 3.544 -0.364 ETKDGv3 13
1DS "O2'" -4.353 2.147 -0.304 ETKDGv3 14
1DS "C6'" -5.398 3.876 -1.608 ETKDGv3 15
1DS "O6'" -6.599 3.153 -1.590 ETKDGv3 16
1DS "O4'" -3.168 5.428 -1.076 ETKDGv3 17
1DS "O3'" -2.205 3.294 -2.321 ETKDGv3 18
1DS "C1'" -2.367 1.323 0.797 ETKDGv3 19
1DS "O1'" -1.062 0.804 0.554 ETKDGv3 20
1DS O2 -5.414 -0.382 -2.816 ETKDGv3 21
1DS O3 -4.955 -2.825 -3.718 ETKDGv3 22
1DS O4 -5.504 -2.808 -0.986 ETKDGv3 23
1DS C1N -0.312 0.156 1.538 ETKDGv3 24
1DS C2N 1.028 -0.405 1.186 ETKDGv3 25
1DS O1N -0.740 0.069 2.721 ETKDGv3 26
1DS C3N 2.096 0.696 1.235 ETKDGv3 27
1DS C4N 3.467 0.214 0.735 ETKDGv3 28
1DS C5N 4.160 -0.732 1.732 ETKDGv3 29
1DS H1 -2.862 -4.263 1.544 ETKDGv3 30
1DS H2 -1.331 -2.943 0.644 ETKDGv3 31
1DS H3 -1.557 -3.759 -0.939 ETKDGv3 32
1DS H4 -3.708 -2.152 0.553 ETKDGv3 33
1DS H5 -4.017 -4.108 -1.557 ETKDGv3 34
1DS H6 -2.979 -2.610 -3.175 ETKDGv3 35
1DS H7 -3.489 -0.392 -3.549 ETKDGv3 36
1DS H8 -4.329 -0.213 -0.627 ETKDGv3 37
1DS H9 -1.250 3.256 -0.478 ETKDGv3 38
1DS H10 -2.904 4.428 0.718 ETKDGv3 39
1DS H11 -5.125 3.859 0.537 ETKDGv3 40
1DS H12 -4.840 3.602 -2.528 ETKDGv3 41
1DS H13 -5.616 4.968 -1.650 ETKDGv3 42
1DS H14 -7.182 3.586 -0.913 ETKDGv3 43
1DS H15 -2.305 5.871 -0.865 ETKDGv3 44
1DS H16 -1.484 3.946 -2.521 ETKDGv3 45
1DS H17 -2.311 2.130 1.560 ETKDGv3 46
1DS H18 -3.011 0.519 1.215 ETKDGv3 47
1DS H19 -5.388 0.598 -2.978 ETKDGv3 48
1DS H20 -4.693 -3.754 -3.950 ETKDGv3 49
1DS H21 -5.662 -3.453 -0.249 ETKDGv3 50
1DS H22 1.278 -1.220 1.897 ETKDGv3 51
1DS H23 0.976 -0.838 0.164 ETKDGv3 52
1DS H24 2.188 1.089 2.272 ETKDGv3 53
1DS H25 1.771 1.538 0.584 ETKDGv3 54
1DS H26 4.100 1.113 0.581 ETKDGv3 55
1DS H27 3.353 -0.289 -0.250 ETKDGv3 56
1DS H28 3.535 -1.640 1.863 ETKDGv3 57
1DS H29 4.253 -0.241 2.725 ETKDGv3 58
1DS C7 5.545 -1.191 1.245 ETKDGv3 59
1DS C8 6.622 -0.106 1.421 ETKDGv3 60
1DS C9 8.000 -0.554 0.907 ETKDGv3 61
1DS C10 8.666 -1.592 1.823 ETKDGv3 62
1DS C11 10.084 -1.907 1.355 ETKDGv3 63
1DS H30 5.830 -2.083 1.842 ETKDGv3 64
1DS H31 5.486 -1.503 0.179 ETKDGv3 65
1DS H32 6.331 0.798 0.847 ETKDGv3 66
1DS H33 6.697 0.186 2.491 ETKDGv3 67
1DS H34 7.904 -0.964 -0.123 ETKDGv3 68
1DS H35 8.653 0.344 0.851 ETKDGv3 69
1DS H36 8.711 -1.203 2.864 ETKDGv3 70
1DS H37 8.081 -2.535 1.823 ETKDGv3 71
1DS H38 10.712 -0.991 1.379 ETKDGv3 72
1DS H39 10.538 -2.665 2.028 ETKDGv3 73
1DS H40 10.067 -2.314 0.322 ETKDGv3 74
#