Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 1DS

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 74


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O6 O O6 N N N 0 -3.98 0.037 3.305
2 C6 C C6 N N N 0 -4.117 -1.315 2.863
3 C5 C C5 R N N 0 -4.265 -1.342 1.341
4 C4 C C4 S N N 0 -4.546 -2.774 0.88
5 C3 C C3 R N N 0 -4.633 -2.803 -0.649
6 C2 C C2 R N N 0 -3.33 -2.249 -1.234
7 C1 C C1 S N N 0 -3.096 -0.837 -0.692
8 O5 O O5 N N N 0 -3.056 -0.877 0.736
9 O1 O O1 N N N 0 -1.854 -0.335 -1.189
10 C2' C C2' S N N 0 -1.651 1.059 -0.946
11 C3' C C3' S N N 0 -2.674 1.885 -1.75
12 C4' C C4' R N N 0 -3.436 2.696 -0.674
13 C5' C C5' R N N 0 -2.443 2.671 0.516
14 O2' O O2' N N N 0 -1.863 1.348 0.446
15 C6' C C6' N N N 0 -3.184 2.869 1.839
16 O6' O O6' N N N 0 -2.237 2.958 2.906
17 O4' O O4' N N N 0 -4.665 2.054 -0.327
18 O3' O O3' N N N 0 -3.569 1.023 -2.455
19 C1' C C1' N N N 0 -0.229 1.455 -1.349
20 O1' O O1' N N N 0 0.724 0.606 -0.659
21 O2 O O2 N N N 0 -3.427 -2.204 -2.659
22 O3 O O3 N N N 0 -5.732 -1.999 -1.08
23 O4 O O4 N N N 0 -5.783 -3.221 1.437
24 C1N C C1N N N N 0 2.026 0.89 -0.825
25 C2N C C2N N N N 0 3.076 -0.014 -0.233
26 O1N O O1N N N N 0 2.355 1.872 -1.448
27 C3N C C3N N N N 0 4.46 0.598 -0.456
28 C4N C C4N N N N 0 5.534 -0.376 0.035
29 C5N C C5N N N N 0 6.918 0.236 -0.189
30 H1 H H1 N N N 0 -3.958 0.137 4.267
31 H2 H H2 N N N 0 -3.233 -1.883 3.153
32 H3 H H3 N N N 0 -5.0 -1.759 3.322
33 H4 H H4 N N N 0 -5.091 -0.696 1.044
34 H5 H H5 N N N 0 -3.739 -3.428 1.211
35 H6 H H6 N N N 0 -4.777 -3.829 -0.987
36 H7 H H7 N N N 0 -2.498 -2.892 -0.945
37 H8 H H8 N N N 0 -3.907 -0.184 -1.015
38 H9 H H9 N N N 0 -2.163 2.555 -2.442
39 H10 H H10 N N N 0 -3.615 3.717 -1.011
40 H11 H H11 N N N 0 -1.674 3.432 0.39
41 H12 H H12 N N N 0 -3.768 3.788 1.795
42 H13 H H13 N N N 0 -3.849 2.024 2.014
43 H14 H H14 N N N 0 -2.637 3.085 3.777
44 H15 H H15 N N N 0 -5.178 2.524 0.343
45 H16 H H16 N N N 0 -4.235 1.491 -2.978
46 H17 H H17 N N N 0 -0.11 1.335 -2.426
47 H18 H H18 N N N 0 -0.052 2.496 -1.078
48 H19 H H19 N N N 0 -2.638 -1.857 -3.096
49 H20 H H20 N N N 0 -5.847 -1.972 -2.04
50 H21 H H21 N N N 0 -6.024 -4.123 1.186
51 H22 H H22 N N N 0 2.897 -0.128 0.836
52 H23 H H23 N N N 0 3.028 -0.99 -0.716
53 H24 H H24 N N N 0 4.605 0.792 -1.519
54 H25 H H25 N N N 0 4.538 1.533 0.098
55 H26 H H26 N N N 0 5.389 -0.57 1.097
56 H27 H H27 N N N 0 5.456 -1.311 -0.519
57 H28 H H28 N N N 0 7.062 0.431 -1.251
58 H29 H H29 N N N 0 6.995 1.172 0.366
59 C7 C C7 N N N 0 7.991 -0.737 0.303
60 C8 C C8 N N N 0 9.376 -0.125 0.079
61 C9 C C9 N N N 0 10.449 -1.099 0.57
62 C10 C C10 N N N 0 11.833 -0.487 0.347
63 C11 C C11 N N N 0 12.906 -1.46 0.838
64 H30 H H30 N N N 0 7.847 -0.931 1.365
65 H31 H H31 N N N 0 7.914 -1.673 -0.252
66 H32 H H32 N N N 0 9.52 0.069 -0.983
67 H36 H H36 N N N 0 11.978 -0.292 -0.715
68 H33 H H33 N N N 0 9.453 0.81 0.633
69 H34 H H34 N N N 0 10.304 -1.293 1.633
70 H35 H H35 N N N 0 10.372 -2.034 0.016
71 H37 H H37 N N N 0 11.91 0.449 0.901
72 H38 H H38 N N N 0 13.893 -1.024 0.679
73 H39 H H39 N N N 0 12.762 -1.654 1.901
74 H40 H H40 N N N 0 12.829 -2.396 0.284