Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 12F    

Bonds between two atoms of the molecule

Total Number of Bonds: 128


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C01 C02 C C doub 1.38 N Y
2 C01 C06 C C sing 1.38 N Y
3 C01 C07 C C sing 1.51 N N
4 O01 C07 O C sing 1.43 N N
5 O01 CAO O C sing 1.36 N N
6 C02 C03 C C sing 1.38 N Y
7 C03 C04 C C doub 1.38 N Y
8 C04 C05 C C sing 1.38 N Y
9 C05 C06 C C doub 1.38 N Y
10 C1' C2' C C sing 1.55 N N
11 C1' O4' C O sing 1.44 N N
12 C1' NBS C N sing 1.47 N N
13 C2' O2' C O sing 1.43 N N
14 C2' C3' C C sing 1.55 N N
15 C3' O3' C O sing 1.43 N N
16 C3' C4' C C sing 1.54 N N
17 C4' O4' C O sing 1.44 N N
18 C4' C5' C C sing 1.53 N N
19 C5' O5' C O sing 1.43 N N
20 O5' PCR O P sing 1.61 N N
21 CAL CAM C C doub 1.38 N Y
22 CAL CAN C C sing 1.38 N Y
23 CAM CAO C C sing 1.39 N Y
24 CAM CBL C C sing 1.51 N N
25 CAN CAP C C doub 1.38 N Y
26 CAO CAQ C C doub 1.39 N Y
27 CAP CAQ C C sing 1.38 N Y
28 CAQ FBR C F sing 1.35 N N
29 CAR CAU C C doub 1.41 N Y
30 CAR NBS C N sing 1.37 N Y
31 CAR NBT C N sing 1.33 N Y
32 CAS NBT C N doub 1.32 N Y
33 CAS NBU C N sing 1.32 N Y
34 CAT CAU C C sing 1.41 N Y
35 CAT NBU C N doub 1.33 N Y
36 CAT NBV C N sing 1.38 N N
37 CAU NBW C N sing 1.35 N Y
38 CAV NBS C N sing 1.36 N Y
39 CAV NBW C N doub 1.3 N Y
40 CAW CAX C C sing 1.53 N N
41 CAW OCK C O sing 1.43 N N
42 CAX CAY C C sing 1.53 N N
43 CAX OCL C O sing 1.43 N N
44 CAY CAZ C C sing 1.53 N N
45 CAY OCM C O sing 1.43 N N
46 CAZ CBA C C sing 1.53 N N
47 CAZ OCN C O sing 1.43 N N
48 CBA NBX C N sing 1.47 N N
49 CBB CBE C C sing 1.5 N N
50 CBB NBX C N sing 1.36 N N
51 CBB NBY C N doub 1.31 N N
52 CBC NBY C N sing 1.34 N N
53 CBC NBZ C N sing 1.34 N N
54 CBC OCO C O doub 1.22 N N
55 CBD CBE C C sing 1.5 N N
56 CBD NBZ C N sing 1.34 N N
57 CBD OCP C O doub 1.21 N N
58 CBE CBL C C sing 1.54 N N
59 CBE NCA C N sing 1.48 N N
60 CBF CBG C C doub 1.39 N Y
61 CBF CBH C C sing 1.39 N Y
62 CBF NBX C N sing 1.4 N N
63 CBG CBI C C sing 1.39 N Y
64 CBG NCA C N sing 1.4 N N
65 CBH CBP C C doub 1.38 N Y
66 CBI CBJ C C doub 1.38 N Y
67 CBJ CBK C C sing 1.51 N N
68 CBJ CBP C C sing 1.38 N Y
69 CBL CBM C C sing 1.54 N N
70 CBM CBN C C sing 1.55 N N
71 CBN NCA C N sing 1.49 N N
72 CBN OCQ C O sing 1.43 N N
73 CBO CBP C C sing 1.51 N N
74 OCF PCR O P sing 1.61 N N
75 OCG PCR O P doub 1.48 N N
76 OCH PCR O P sing 1.61 N N
77 OCH PCS O P sing 1.61 N N
78 OCI PCS O P doub 1.48 N N
79 OCJ PCS O P sing 1.61 N N
80 OCK PCS O P sing 1.61 N N
81 C02 H02 C H sing 1.08 N N
82 C03 H03 C H sing 1.08 N N
83 C04 H04 C H sing 1.08 N N
84 C05 H05 C H sing 1.08 N N
85 C06 H06 C H sing 1.08 N N
86 C07 H07 C H sing 1.09 N N
87 C07 H07A C H sing 1.09 N N
88 C1' H1' C H sing 1.09 N N
89 C2' H2' C H sing 1.09 N N
90 O2' HO2' O H sing 0.97 N N
91 C3' H3' C H sing 1.09 N N
92 O3' HO3' O H sing 0.97 N N
93 C4' H4' C H sing 1.09 N N
94 C5' H5' C H sing 1.09 N N
95 C5' H5'A C H sing 1.09 N N
96 CAL HAL C H sing 1.08 N N
97 CAN HAN C H sing 1.08 N N
98 CAP HAP C H sing 1.08 N N
99 CAS HAS C H sing 1.08 N N
100 CAV HAV C H sing 1.08 N N
101 CAW HAW C H sing 1.09 N N
102 CAW HAWA C H sing 1.09 N N
103 CAX HAX C H sing 1.09 N N
104 CAY HAY C H sing 1.09 N N
105 CAZ HAZ C H sing 1.09 N N
106 CBA HBA C H sing 1.09 N N
107 CBA HBAA C H sing 1.09 N N
108 CBH HBH C H sing 1.08 N N
109 CBI HBI C H sing 1.08 N N
110 CBK HBK C H sing 1.09 N N
111 CBK HBKA C H sing 1.09 N N
112 CBK HBKB C H sing 1.09 N N
113 CBL HBL C H sing 1.09 N N
114 CBM HBM C H sing 1.09 N N
115 CBM HBMA C H sing 1.09 N N
116 CBO HBO C H sing 1.09 N N
117 CBO HBOA C H sing 1.09 N N
118 CBO HBOB C H sing 1.09 N N
119 NBV HNBV N H sing 0.97 N N
120 NBV HNBA N H sing 0.97 N N
121 NBZ HNBZ N H sing 0.97 N N
122 OCL HOCL O H sing 0.97 N N
123 OCM HOCM O H sing 0.97 N N
124 OCN HOCN O H sing 0.97 N N
125 OCF HOCF O H sing 0.97 N N
126 OCJ HOCJ O H sing 0.97 N N
127 OCQ HOCQ O H sing 0.97 N N
128 CBN HCBN C H sing 1.09 N N