Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 12F

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 120


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C01 C C01 N Y N 0 -5.539 4.407 -1.992
2 O01 O O01 N N N 0 -6.715 2.345 -2.328
3 C02 C C02 N Y N 0 -5.306 4.733 -0.669
4 C03 C C03 N Y N 0 -5.394 6.049 -0.255
5 C04 C C04 N Y N 0 -5.715 7.039 -1.164
6 C05 C C05 N Y N 0 -5.948 6.714 -2.487
7 C06 C C06 N Y N 0 -5.861 5.398 -2.901
8 C07 C C07 N N N 0 -5.437 2.974 -2.444
9 C1' C C1' R N N 0 9.652 1.168 -1.106
10 C2' C C2' R N N 0 10.689 0.334 -1.9
11 O2' O O2' N N N 0 11.575 1.184 -2.631
12 C3' C C3' S N N 0 9.786 -0.479 -2.859
13 O3' O O3' N N N 0 9.729 0.147 -4.142
14 C4' C C4' R N N 0 8.401 -0.454 -2.185
15 O4' O O4' N N N 0 8.541 0.26 -0.945
16 C5' C C5' N N N 0 7.931 -1.884 -1.911
17 O5' O O5' N N N 0 6.599 -1.857 -1.393
18 CAL C CAL N Y N 0 -6.718 -1.289 -2.136
19 CAM C CAM N Y N 0 -6.633 0.037 -1.756
20 CAN C CAN N Y N 0 -6.964 -1.617 -3.456
21 CAO C CAO N Y N 0 -6.797 1.04 -2.7
22 CAP C CAP N Y N 0 -7.128 -0.621 -4.4
23 CAQ C CAQ N Y N 0 -7.044 0.708 -4.026
24 CAR C CAR N Y N 0 10.979 2.652 0.458
25 CAS C CAS N Y N 0 12.216 4.581 0.282
26 CAT C CAT N Y N 0 12.049 3.636 2.382
27 CAU C CAU N Y N 0 11.251 2.616 1.836
28 CAV C CAV N Y N 0 10.007 0.899 1.378
29 CAW C CAW N N N 0 0.719 -3.314 1.17
30 CAX C CAX R N N 0 -0.461 -2.387 0.875
31 CAY C CAY S N N 0 -1.686 -2.853 1.665
32 CAZ C CAZ S N N 0 -2.874 -1.943 1.348
33 CBA C CBA N N N 0 -4.081 -2.37 2.186
34 CBB C CBB N N N 0 -6.143 -1.693 1.038
35 CBC C CBC N N N 0 -7.275 -3.268 -0.229
36 CBD C CBD N N N 0 -8.279 -1.159 -0.084
37 CBE C CBE S N N 0 -7.077 -0.6 0.626
38 CBF C CBF N Y N 0 -5.281 -0.245 2.701
39 CBG C CBG N Y N 0 -6.411 0.559 2.598
40 CBH C CBH N Y N 0 -4.235 0.126 3.533
41 CBI C CBI N Y N 0 -6.477 1.741 3.33
42 CBJ C CBJ N Y N 0 -5.431 2.106 4.154
43 CBK C CBK N N N 0 -5.51 3.387 4.944
44 CBL C CBL R N N 0 -6.365 0.393 -0.316
45 CBM C CBM N N N 0 -6.987 1.765 0.024
46 CBN C CBN R N N 0 -8.004 1.472 1.15
47 CBO C CBO N N N 0 -3.175 1.704 5.161
48 CBP C CBP N Y N 0 -4.311 1.301 4.257
49 FBR F FBR N N N 0 -7.204 1.682 -4.948
50 NBS N NBS N Y N 0 10.193 1.558 0.199
51 NBT N NBT N Y N 0 11.477 3.644 -0.273
52 NBU N NBU N Y N 0 12.499 4.589 1.572
53 NBV N NBV N N N 0 12.35 3.653 3.732
54 NBW N NBW N Y N 0 10.628 1.522 2.337
55 NBX N NBX N N N 0 -5.186 -1.433 1.963
56 NBY N NBY N N N 0 -6.261 -2.908 0.566
57 NBZ N NBZ N N N 0 -8.3 -2.44 -0.49
58 NCA N NCA N N N 0 -7.498 0.217 1.781
59 OCF O OCF N N N 0 5.519 -4.071 -2.311
60 OCG O OCG N N N 0 6.579 -3.976 -0.022
61 OCH O OCH N N N 0 4.378 -2.777 -0.327
62 OCI O OCI N N N 0 3.194 -4.947 0.181
63 OCJ O OCJ N N N 0 3.846 -3.5 2.144
64 OCK O OCK N N N 0 1.892 -2.812 0.525
65 OCL O OCL N N N 0 -0.756 -2.42 -0.523
66 OCM O OCM N N N 0 -1.401 -2.794 3.064
67 OCN O OCN N N N 0 -3.197 -2.048 -0.041
68 OCO O OCO N N N 0 -7.268 -4.377 -0.73
69 OCP O OCP N N N 0 -9.238 -0.447 -0.292
70 OCQ O OCQ N N N 0 -9.309 1.268 0.605
71 PCR P PCR N N N 0 5.786 -3.188 -0.992
72 PCS P PCS N N N 0 3.325 -3.54 0.621
73 H02 H H02 N N N 0 -5.055 3.959 0.042
74 H03 H H03 N N N 0 -5.212 6.303 0.779
75 H04 H H04 N N N 0 -5.785 8.067 -0.84
76 H05 H H05 N N N 0 -6.2 7.488 -3.197
77 H06 H H06 N N N 0 -6.043 5.143 -3.934
78 H07 H H07 N N N 0 -5.11 2.943 -3.484
79 H07A H H07A N N N 0 -4.714 2.447 -1.821
80 H1' H H1' N N N 0 9.35 2.047 -1.675
81 H2' H H2' N N N 0 11.247 -0.327 -1.236
82 HO2' H HO2' N N N 0 12.243 0.709 -3.144
83 H3' H H3' N N N 0 10.151 -1.502 -2.95
84 HO3' H HO3' N N N 0 10.585 0.212 -4.587
85 H4' H H4' N N N 0 7.685 0.057 -2.828
86 H5' H H5' N N N 0 7.948 -2.457 -2.838
87 H5'A H H5'A N N N 0 8.594 -2.352 -1.183
88 HAL H HAL N N N 0 -6.586 -2.07 -1.401
89 HAN H HAN N N N 0 -7.029 -2.655 -3.75
90 HAP H HAP N N N 0 -7.32 -0.88 -5.431
91 HAS H HAS N N N 0 12.606 5.372 -0.34
92 HAV H HAV N N N 0 9.429 -0.005 1.498
93 HAW H HAW N N N 0 0.887 -3.357 2.246
94 HAWA H HAWA N N N 0 0.498 -4.314 0.796
95 HAX H HAX N N N 0 -0.206 -1.368 1.168
96 HAY H HAY N N N 0 -1.929 -3.878 1.387
97 HAZ H HAZ N N N 0 -2.615 -0.911 1.583
98 HBA H HBA N N N 0 -4.391 -3.373 1.893
99 HBAA H HBAA N N N 0 -3.81 -2.367 3.241
100 HBH H HBH N N N 0 -3.36 -0.502 3.615
101 HBI H HBI N N N 0 -7.348 2.374 3.253
102 HBK H HBK N N N 0 -5.965 3.188 5.914
103 HBKA H HBKA N N N 0 -4.506 3.787 5.089
104 HBKB H HBKB N N N 0 -6.115 4.113 4.4
105 HBL H HBL N N N 0 -5.293 0.401 -0.121
106 HBM H HBM N N N 0 -6.219 2.453 0.377
107 HBMA H HBMA N N N 0 -7.495 2.178 -0.847
108 HBO H HBO N N N 0 -2.462 2.309 4.601
109 HBOA H HBOA N N N 0 -3.564 2.283 5.999
110 HBOB H HBOB N N N 0 -2.676 0.81 5.538
111 HNBV H HNBV N N N 0 12.009 2.956 4.314
112 HNBA H HNBA N N N 0 12.902 4.363 4.097
113 HNBZ H HNBZ N N N 0 -9.068 -2.773 -0.98
114 HOCL H HOCL N N N 0 -0.992 -3.297 -0.854
115 HOCM H HOCM N N N 0 -1.176 -1.909 3.382
116 HOCN H HOCN N N N 0 -3.51 -2.924 -0.306
117 HOCF H HOCF N N N 0 5.004 -3.617 -2.992
118 HOCJ H HOCJ N N N 0 3.955 -2.607 2.499
119 HOCQ H HOCQ N N N 0 -9.662 2.033 0.132
120 HCBN H HCBN N N N 0 -8.016 2.286 1.875